Commits · 32336457ef91c3f4b08d7ba1c429d1589c892ce4 · Chaos / chaos.juicer

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Jun 18, 2017
- adding ligation and thread flags · 32336457
  nchernia authored Jun 18, 2017
  
  View commits for tag 1.5.5 1.5.5
  
  32336457
- added ligation and threads flag to CPU version · 0cbc5e4d
  nchernia authored Jun 18, 2017
  
  0cbc5e4d
Jun 16, 2017
- fixed problem with naming optdups versus opt_dups · a21d3b37
  nchernia authored Jun 16, 2017
  
  a21d3b37
- fixed bug with nofrag where we were not checking appropriately in hic and hic30 scripts · f8c584a0
  nchernia authored Jun 16, 2017
  
  f8c584a0
Jun 15, 2017
- Create juicer_tools · 2992f9d7
  Aiden Lab authored Jun 15, 2017
  
  2992f9d7
Jun 14, 2017
- Send in early exit tag to check.sh · d5ab58e8
  nchernia authored Jun 14, 2017
  
  d5ab58e8
Jun 05, 2017
- Merge pull request #21 from paulmenzel/improve-readme · 27584e27
  Muhammad Saad Shamim authored Jun 04, 2017
  27584e27
Jun 03, 2017
- README: Improve section *CUDA (for HiCCUPS peak calling)* · bbfb4e6c
  Paul Menzel authored Jun 03, 2017
  bbfb4e6c
- README: Make resource management software names clickable links · 9af85225
  Paul Menzel authored Jun 03, 2017
  
  9af85225
- README: Update LSF URL · 7656d112
  Paul Menzel authored Jun 03, 2017
  
  7656d112
- README: Use more secure HTTPS URLs where possible · 429389f0
  Paul Menzel authored Jun 03, 2017
  429389f0
- README: Wrap some long lines · 1ca4f39d
  Paul Menzel authored Jun 03, 2017
  
  1ca4f39d
- README: Strip trailing spaces · 171fe800
  Paul Menzel authored Jun 03, 2017
  171fe800
- README: Enumerate analysis functions · cabe47af
  Paul Menzel authored Jun 03, 2017
  
  cabe47af
May 19, 2017
- UGER mega.sh changes. Changed queue to be parameter, updated the memory flag · a7f78d5c
  nchernia authored May 19, 2017
  
  a7f78d5c
- Update README.md · beb31ff4
  Aiden Lab authored May 19, 2017
  
  beb31ff4
May 18, 2017
- Added updated check that looks for the early exit tag. Need to add into Juicer... · 2fd1bd76
  nchernia authored May 18, 2017
  2fd1bd76
- fixing unnecessary check in the check script · 65e0990d
  nchernia authored May 18, 2017
  
  65e0990d
- reconciling scripts before another dev push · 8f56d319
  nchernia authored May 18, 2017
  
  8f56d319
May 11, 2017
- modified cleanup script; fixed bug in split rmdups · f69ad69a
  nchernia authored May 11, 2017
  
  f69ad69a
May 06, 2017
- Merge pull request #17 from Cy288/patch-1 · 8516edef
  Aiden Lab authored May 05, 2017
  8516edef
- Update juicer.sh · 7403a9f1
  Cy288 authored May 05, 2017
  
  7403a9f1
- Merge pull request #14 from tannerbeck/master · e471e8b1
  Aiden Lab authored May 05, 2017
  e471e8b1
Apr 22, 2017
- Change 1 core to 8 cores. With 2g/c this results in 16 gb of RAM being... · 662ea00b
  tannerbeck authored Apr 21, 2017
  662ea00b
Apr 03, 2017
- Update juicer.sh · 855e6291
  Aiden Lab authored Apr 03, 2017
  
  View commits for tag 1.5.4 1.5.4
  
  855e6291
- nofrag update · 89aaf8b1
  Aiden Lab authored Apr 03, 2017
  
  89aaf8b1
- nofrag check · b6fe1b97
  Aiden Lab authored Apr 03, 2017
  
  b6fe1b97
- nofrag · 8134bcec
  Aiden Lab authored Apr 03, 2017
  
  8134bcec
- nofrag doesn't check restriction site file · 8536fa8f
  Aiden Lab authored Apr 03, 2017
  
  8536fa8f
Mar 29, 2017
- minor changes to better align scripts · d940e9e0
  nchernia authored Mar 29, 2017
  
  d940e9e0
- got rid of bc dependency · 1d27db8d
  nchernia authored Mar 29, 2017
  
  1d27db8d
- get rid of unnecessary file · cae9b79a
  nchernia authored Mar 29, 2017
  
  cae9b79a
- if no frag flag sent, do not check restriction site file · bc6d001e
  nchernia authored Mar 29, 2017
  
  bc6d001e
- changed the name from juicebox to juicer_tools everywhere. deleted jars, these... · bfe7bf89
  nchernia authored Mar 29, 2017
  bfe7bf89
- Update juicer_arrowhead.sh · a219594d
  nchernia authored Mar 29, 2017
  
  a219594d
- juicer tools · d9c6c9c1
  nchernia authored Mar 29, 2017
  
  d9c6c9c1
- Juicer tools rename · aea6bfaa
  nchernia authored Mar 29, 2017
  
  aea6bfaa
- Update juicer_tools · eb6d1f7c
  nchernia authored Mar 29, 2017
  
  eb6d1f7c
- Update README.md · 22f8d8d3
  nchernia authored Mar 29, 2017
  
  22f8d8d3
- Change juicebox to juicer_tools · 1aefcb93
  nchernia authored Mar 29, 2017
  
  1aefcb93

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Commits · 32336457ef91c3f4b08d7ba1c429d1589c892ce4