Commits · 2ea1ae1f95f9c1faec1d317c588452d46c8b8581 · Chaos / chaos.juicer · GitLab

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Feb 26, 2019
- updating to modern version of mega.sh; adding the sum awk script for mega · 2ea1ae1f
  nchernia authored Feb 25, 2019
  
  2ea1ae1f
Feb 02, 2019
- Moved Library Complexity into jar · 23f80dd0
  nchernia authored Feb 01, 2019
  
  23f80dd0
May 18, 2018
- change to call alignonly without chrom.sizes; merging moved to appropriate... · f44753e7
  nchernia authored May 17, 2018
  f44753e7
May 04, 2018
- Merge pull request #61 from SooLee/patch-1 · 9c55ecb1
  nchernia authored May 03, 2018
  9c55ecb1
- Update generate_site_positions.py · 95c361de
  Soo Lee authored May 03, 2018
  
  95c361de
Apr 06, 2018
- Bug fix for postproc stage; bug fix for when count ligations takes longer than alignment · 5b5bd5ef
  nchernia authored Apr 06, 2018
  
  5b5bd5ef
Jan 26, 2018
- updating to include option for flags -1 and -2 to read in files from command... · 1da25fb7
  nchernia authored Jan 25, 2018
  1da25fb7
Nov 16, 2017
- fixed bug · 38330c69
  Aiden Lab authored Nov 15, 2017
  
  View commits for tag 1.6.2 1.6.2
  
  38330c69
- adding in no check when not needed for different stages · 7ff22d99
  Aiden Lab authored Nov 15, 2017
  
  7ff22d99
- Update juicer.sh · 25826325
  Aiden Lab authored Nov 15, 2017
  
  25826325
- Update juicer.sh · 063d0465
  Aiden Lab authored Nov 15, 2017
  
  063d0465
- Update juicer.sh · 099b50a4
  Aiden Lab authored Nov 15, 2017
  
  View commits for tag 1.6.1 1.6.1
  
  099b50a4
- Update juicer.sh · ec0a6fe1
  Aiden Lab authored Nov 15, 2017
  
  ec0a6fe1
Nov 09, 2017
- fix bug with call to bwa · a0931902
  Aiden Lab authored Nov 08, 2017
  
  View commits for tag 1.6.0 1.6.0
  
  a0931902
- adding bam to text script · 7095d6fa
  Aiden Lab authored Nov 08, 2017
  
  7095d6fa
- adding bam to text script, adjusting stats · 497f26be
  Aiden Lab authored Nov 08, 2017
  
  497f26be
Nov 08, 2017
- added in differing collisions treatment, taking out collisions script · b5c09390
  Aiden Lab authored Nov 07, 2017
  
  b5c09390
- further bug fixes to encode pipeline · b3aaa058
  Aiden Lab authored Nov 07, 2017
  
  b3aaa058
Sep 13, 2017
- working out kinks with mapq0 shunting and BWA versions and flags · ca2f9ad4
  Aiden Lab authored Sep 12, 2017
  
  ca2f9ad4
Aug 26, 2017
- fixed small bug in chimeric script, added alignonly mode to juicer · 4096a0a7
  Aiden Lab authored Aug 25, 2017
  
  4096a0a7
Aug 25, 2017
- mostly working version of 1.6 · f0317a2f
  Aiden Lab authored Aug 25, 2017
  
  f0317a2f
Aug 17, 2017
- developing · 32f56437
  Aiden Lab authored Aug 17, 2017
  
  32f56437
Aug 16, 2017
- Adding in the f field to the sort so that problems with .1 versus .10 are resolved appropriately · 4ac211d4
  Aiden Lab authored Aug 16, 2017
  
  4ac211d4
Aug 12, 2017
- Fix error filename · 76c63a19
  Aiden Lab authored Aug 12, 2017
  76c63a19
Aug 10, 2017
- Update README.md · 24a0c38a
  Aiden Lab authored Aug 10, 2017
  
  24a0c38a
- Update README.md · e786b038
  Aiden Lab authored Aug 10, 2017
  
  e786b038
- Some bug fixes in SLURM and with CPU · 3ccb4742
  nchernia authored Aug 10, 2017
  
  View commits for tag 1.5.6 1.5.6
  
  3ccb4742
- Merge pull request #24 from theaidenlab/juicer1.5.6 · 628d9711
  Aiden Lab authored Aug 09, 2017
  628d9711
Aug 09, 2017
- Merge branch 'master', remote-tracking branch 'origin' into juicer1.5.6 · 7601ce54
  Ubuntu authored Aug 09, 2017
  
  7601ce54
- Merge branch 'master' into juicer1.5.6 · 6552e8c4
  Ubuntu authored Aug 09, 2017
  
  6552e8c4
- fixed some bugs in AWS · 2011babc
  Ubuntu authored Aug 09, 2017
  
  2011babc
- making consistent with dev version; adding in -V to nvcc command and updating dirs · d9e6c7bf
  nchernia authored Aug 09, 2017
  
  d9e6c7bf
Jul 18, 2017
- Fixed bug where multiple fastqs would not be processed. Got rid of unnecessary print out · 56a1db61
  nchernia authored Jul 18, 2017
  
  56a1db61
Jul 17, 2017
- updating AWS to juicer 1.5.6, small mods to UGER · 9e67e2ac
  nchernia authored Jul 17, 2017
  
  9e67e2ac
- getting rid of queue print out · 2e07e55b
  nchernia authored Jul 17, 2017
  
  2e07e55b
- Juicer 1.5.6 update. · 7f41b80a
  nchernia authored Jul 17, 2017
  7f41b80a
Jun 18, 2017
- adding ligation and thread flags · 32336457
  nchernia authored Jun 18, 2017
  
  View commits for tag 1.5.5 1.5.5
  
  32336457
- added ligation and threads flag to CPU version · 0cbc5e4d
  nchernia authored Jun 18, 2017
  
  0cbc5e4d
Jun 16, 2017
- fixed problem with naming optdups versus opt_dups · a21d3b37
  nchernia authored Jun 16, 2017
  
  a21d3b37
- fixed bug with nofrag where we were not checking appropriately in hic and hic30 scripts · f8c584a0
  nchernia authored Jun 16, 2017
  
  f8c584a0

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