adding bam to text script (7095d6fa) · Commits · Chaos / chaos.juicer

CPU/common/statistics.pl

+1 −9

Original line number	Diff line number	Diff line
		@@ -331,15 +331,6 @@ else {
		}
		printf FILE "%0.2f\%)\n", $intra_fragment*100/$unique;

		print FILE "Below MAPQ Threshold: " . commify($under_mapq);
		if ($seq == 1) {
		printf FILE " (%0.2f\% / ", $under_mapq*100/$reads;
		}
		else {
		print FILE "(";
		}
		printf FILE "%0.2f\%)\n", $under_mapq*100/$unique;

		print FILE "Hi-C Contacts: " . commify($total_current);
		if ($seq == 1) {
		printf FILE " (%0.2f\% / ", $total_current*100/$reads;
		@@ -356,6 +347,7 @@ if ($seq == 1) {
		else {
		print FILE "(";
		}

		printf FILE "%0.2f\%)\n", $ligation*100/$unique;

		if ($five_prime_end + $three_prime_end > 0) {