Commit a0931902 authored by Aiden Lab's avatar Aiden Lab
Browse files

fix bug with call to bwa

parent 7095d6fa
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+1 −1
Original line number Diff line number Diff line
@@ -60,7 +60,7 @@
shopt -s extglob
juicer_version="1.5.6" 
### LOAD BWA AND SAMTOOLS
bwa_cmd="/home/neva/bwa-0.7.17/bwa"
bwa_cmd="bwa"
# fastq files should look like filename_R1.fastq and filename_R2.fastq 
# if your fastq files look different, change this value
read1str="_R1"