Commits · 213f7f718ec78e8ba6fab0714c0493b557f94dce · github_fork / ZUMIs

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Aug 09, 2018
- prepare for release · 213f7f71
  Christoph Ziegenhain authored Aug 09, 2018
  
  213f7f71
- prevent error with too little RAM for samtools · 14b36ebe
  Christoph Ziegenhain authored Aug 09, 2018
  
  14b36ebe
- added pattern finding functionality · 46423135
  Christoph Ziegenhain authored Aug 09, 2018
  
  46423135
- fix shiny bug · baa56424
  Christoph Ziegenhain authored Aug 08, 2018
  
  baa56424
Aug 08, 2018
- add upload/download possibilities · 20aa13d5
  Christoph Ziegenhain authored Aug 08, 2018
  
  20aa13d5
- Improve Shiny with help text & pattern input · 0dcec26a
  Christoph Ziegenhain authored Aug 07, 2018
  
  0dcec26a
Aug 06, 2018
- clean up intermediate files · c6cc33fa
  Christoph Ziegenhain authored Aug 06, 2018
  
  c6cc33fa
- Remove internal SLURM option · d761949e
  EC2 Default User authored Aug 06, 2018
  
  d761949e
- force bam merge · 96fcf395
  EC2 Default User authored Aug 06, 2018
  
  96fcf395
Aug 03, 2018
- prevent nonsensical UMIcounts in case of Smart-seq data · b76b83ec
  Christoph Ziegenhain authored Aug 03, 2018
  
  b76b83ec
Aug 02, 2018
- faster zUMIs2.0 is ready · d22c364e
  Swati Parekh authored Aug 02, 2018
  
  d22c364e
- final commit after slurm debugging · 7e5bb5e2
  Swati Parekh authored Aug 02, 2018
  
  7e5bb5e2
- fix NA in summary plots · 0cf89e92
  Christoph Ziegenhain authored Aug 02, 2018
  
  0cf89e92
Aug 01, 2018
- Merge branch 'zUMIs-dev' of https://github.com/sdparekh/zUMIs into zUMIs-dev · b2915bcc
  Christoph Ziegenhain authored Aug 01, 2018
  
  b2915bcc
- use featureCounts threading · 21ba6c57
  Christoph Ziegenhain authored Aug 01, 2018
  
  21ba6c57
- just commit · 97b1789a
  sdparekh authored Aug 01, 2018
  
  97b1789a
- yet another commit · 0edc4185
  sdparekh authored Aug 01, 2018
  
  0edc4185
- fixed a bug in slurm · 194933c2
  sdparekh authored Aug 01, 2018
  
  194933c2
- fixed a bug in slurm splitfq · 05f3409a
  sdparekh authored Aug 01, 2018
  
  05f3409a
- reduce unncessary verbose · af3f8ed0
  Christoph Ziegenhain authored Aug 01, 2018
  
  af3f8ed0
- fix faulty branch merge · fc65406c
  Christoph Ziegenhain authored Aug 01, 2018
  
  fc65406c
- BC chunk grep · fa60b86c
  Christoph Ziegenhain authored Aug 01, 2018
  
  fa60b86c
- prevent additional chunk · 87489247
  Christoph Ziegenhain authored Jul 31, 2018
  
  87489247
- adapt to read BC from threaded fqfilter · c1a9113d
  Christoph Ziegenhain authored Jul 31, 2018
  
  c1a9113d
- Merge branch 'zUMIs-dev' of https://github.com/sdparekh/zUMIs into zUMIs-dev · 5f26d8d7
  Swati Parekh authored Jul 31, 2018
  5f26d8d7
- temporary commit to test multithreading · 3b5b0f80
  Swati Parekh authored Jul 31, 2018
  
  3b5b0f80
Jul 27, 2018
- load perl module from dynamic path · cd850b06
  ziegenhain@bio.lmu.de authored Jul 27, 2018
  
  cd850b06
Jul 26, 2018
- fix possible bug in loading barcode settings · 564f89a8
  cziegenhain authored Jul 26, 2018
  
  564f89a8
Jun 29, 2018
- update shiny app · 49b678c8
  ziegenhain@bio.lmu.de authored Jun 29, 2018
  
  49b678c8
Jun 27, 2018
- Fix TwoPass Mapping Switch · cf69a1d0
  ziegenhain@bio.lmu.de authored Jun 26, 2018
  
  cf69a1d0
Jun 23, 2018
- bug fixed & new shiny app to configure yaml files · 3d1926b8
  ziegenhain@bio.lmu.de authored Jun 23, 2018
  
  3d1926b8
Jun 19, 2018
- fix stats feature plot · 3ef70087
  ziegenhain@bio.lmu.de authored Jun 19, 2018
  
  3ef70087
Jun 18, 2018
- Performance updates & prevent stats crash · 7b3969bb
  ziegenhain@bio.lmu.de authored Jun 18, 2018
  
  7b3969bb
Jun 11, 2018
- edit README · 5030eb44
  ziegenhain@bio.lmu.de authored Jun 11, 2018
  
  5030eb44
- fix saving bugs in stats · 65e694fa
  ziegenhain@bio.lmu.de authored Jun 11, 2018
  
  65e694fa
- general commit; small fixes in stats · 43a80699
  ziegenhain@bio.lmu.de authored Jun 11, 2018
  
  43a80699
Jun 08, 2018
- prevent crashing when wrong barcodefile is given · 61010084
  ziegenhain@bio.lmu.de authored Jun 07, 2018
  
  61010084
- Small optimizations & improve verbose · 15f6112f
  ziegenhain@bio.lmu.de authored Jun 07, 2018
  
  15f6112f
Jun 07, 2018
- Prevent crashes in barcode selection, set up for stats generation · a5109444
  ziegenhain@bio.lmu.de authored Jun 07, 2018
  
  a5109444
- fix some typos, call stats correctly · 881eff21
  ziegenhain@bio.lmu.de authored Jun 07, 2018
  
  881eff21

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Commits · 213f7f718ec78e8ba6fab0714c0493b557f94dce