yet another commit

	pref=`basename $f`

	ls $tmpMerge$pref* | sed "s|$tmpMerge$pref||" > $tmpMerge/$project.listPrefix.txt

fi

 $zumisdir $tmpMerge $f $project $yaml $samtoolsexc $Rexc $pigzexc $zumisdir

for x in `cat $tmpMerge/$project.listPrefix.txt`; do bash $zumisdir/fqfilter_v2.pl $yaml $samtoolsexc $Rexc $pigzexc $zumisdir $x & done

wait

    j=`cat $outdir/$project.splitfq.slurmjobid.txt | cut -f4 -d' '`

    sbatch --cpus-per-task=1 --dependency=afterok:'$j' --mem=1M --wrap="bash $zumisdir/listPrefix.sh $zumisdir $tmpMerge $f $project" > $outdir/$project.listPrefix.slurmjobid.txt

    sbatch --cpus-per-task=1 --dependency=afterok:'$j' --mem=1M --wrap="bash $zumisdir/listPrefix.sh $zumisdir $tmpMerge $f $project $yaml $samtoolsexc $Rexc $pigzexc $zumisdir" > $outdir/$project.listPrefix.slurmjobid.txt

    j=`cat $outdir/$project.listPrefix.slurmjobid.txt | cut -f4 -d' '`

    for x in `cat $tmpMerge/$project.listPrefix.txt`;do sbatch --cpus-per-task=$num_threads --dependency=afterok:'$j' --mem=10M --wrap="bash $zumisdir/fqfilter_v2.pl $yaml $samtoolsexc $Rexc $pigzexc $zumisdir $x" > $outdir/$project.fqfilter_v2.slurmjobid.txt;done

  #  for x in `cat $tmpMerge/$project.listPrefix.txt`;do sbatch --cpus-per-task=$num_threads --dependency=afterok:'$j' --mem=10M --wrap="bash $zumisdir/fqfilter_v2.pl $yaml $samtoolsexc $Rexc $pigzexc $zumisdir $x" > $outdir/$project.fqfilter_v2.slurmjobid.txt;done

    j=`cat $outdir/$project.fqfilter_v2.slurmjobid.txt | cut -f4 -d' '`

  #  j=`cat $outdir/$project.fqfilter_v2.slurmjobid.txt | cut -f4 -d' '`

    sbatch --cpus-per-task=1 --dependency=afterok:'$j' --mem=1M --wrap="bash $zumisdir/mergeBAM.sh $zumisdir $tmpMerge $num_threads $project $outdir $yaml" > $outdir/$project.mergeBAM.slurmjobid.txt