load perl module from dynamic path (cd850b06) · Commits · github_fork / ZUMIs

fqfilter_v2.pl

+2 −6

Original line number	Diff line number	Diff line
		@@ -11,7 +11,7 @@ Please drop your suggestions and clarifications to <sparekh\@age.mpg.de>\n
		######################################################################################\n\n";
		exit;
		}

		BEGIN{
		$yml=$ARGV[0];
		$samtoolsexc=$ARGV[1];
		$rscriptexc=$ARGV[2];
		@@ -25,12 +25,8 @@ print $samtoolsexc;
		print $pigz;
		print $rscriptexc;
		=cut
		BEGIN{
		# print $zumisdir;
		#print "@INC";
		unshift @INC, '/data/share/htp/zUMIs2/zUMIs';
		# print "@INC";
		}
		use lib "$zumisdir";
		use distilReads;

		open(YL,"Rscript $zumisdir/readYaml4fqfilter.R $yml \|");