Commits · e08345ed7e11b27ff6f5e67ce2dd4bf679f644b5 · github_fork / Universc · GitLab

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May 12, 2021
- rename Index 2 files · e08345ed
  TomKellyGenetics authored May 12, 2021
  
  e08345ed
May 11, 2021
- add default whitelists · 74fff3c1
  TomKellyGenetics authored May 12, 2021
  
  74fff3c1
- correct automated indexes and Smart-Seq3 conversion · f47ae615
  TomKellyGenetics authored May 12, 2021
  
  f47ae615
- update smartseq3 tests for TSO and dual indexes · 4cdc8d7a
  TomKellyGenetics authored May 12, 2021
  
  4cdc8d7a
- correct default to UMI-based · 88e8e5f8
  TomKellyGenetics authored May 11, 2021
  
  88e8e5f8
- update test jobs to ensure reuse · 87caa450
  TomKellyGenetics authored May 11, 2021
  
  87caa450
May 10, 2021
- update unit tests for per-cell data · b344f972
  TomKellyGenetics authored May 10, 2021
  
  b344f972
- update documentation for non-UMI ICELL8 5' scRNA · eb432c18
  TomKellyGenetics authored May 10, 2021
  
  eb432c18
- update ICELL8 5' scRNA TSO adapter and non-UMI technology · 25c5afc0
  TomKellyGenetics authored May 10, 2021
  
  25c5afc0
- Merge branch 'dev' of github.com:kbattenb/universc into dev · 7a68a288
  TomKellyGenetics authored May 10, 2021
  
  7a68a288
- Merge branch 'dev' of github.com:minoda-lab/universc into dev · ed34f993
  kai.b authored May 10, 2021
  
  ed34f993
- minor bug fix for basic stats. · 12ebe2de
  kai.b authored May 10, 2021
  
  12ebe2de
- update documentation for 1.1.0 release · ae171103
  TomKellyGenetics authored May 10, 2021
  
  ae171103
- Merge branch 'master' of github.com:TomKellyGenetics/universc into dev · accdcd30
  TomKellyGenetics authored May 10, 2021
  
  accdcd30
- correct syntax bugs · c32f6874
  TomKellyGenetics authored May 10, 2021
  
  c32f6874
May 06, 2021
- update subroutines for ICELL8 5' scRNA and Full length Smart-Seq ICELL8 cx · e0bfbf62
  TomKellyGenetics authored May 06, 2021
  
  e0bfbf62
- add inputs and barcode whitelists for ICELL8 5' scRNA (TCR) and SMART-Seq ICELL8 full-length scRNA · e04d06e7
  TomKellyGenetics authored May 06, 2021
  
  e04d06e7
- add inputs and barcode whitelists for ICELL8 5' scRNA (TCR) and SMART-Seq ICELL8 full-length scRNA · d7b33a8f
  TomKellyGenetics authored May 06, 2021
  
  d7b33a8f
- update smart-seq3 default barcodes to nextera dual indexes · 752d4514
  TomKellyGenetics authored May 06, 2021
  
  752d4514
- test smart-seq3 with custom barcode whitelists · 3c15bcd7
  TomKellyGenetics authored May 06, 2021
  
  3c15bcd7
- custom barcodes with Aligent SureSelectXT Low Input for Smart-Seq3 test · cdb980d9
  TomKellyGenetics authored May 06, 2021
  
  cdb980d9
- support 5' chemistry with C1 CAGE with TSO conversion · 85db86af
  TomKellyGenetics authored Apr 30, 2021
  
  85db86af
- automatic detection of barcode length from index files for C1, Quartz-Seq and RamDA-Seq · 7d18236f
  TomKellyGenetics authored Apr 30, 2021
  7d18236f
Apr 30, 2021
- add default indexes and subroutines for QuartzSeq TruSeq and C1 dual-indexed Nextera libraries · 2efa7307
  TomKellyGenetics authored Apr 30, 2021
  
  2efa7307
- add inputs for C1 Fluidigm RNA-Seq, C1 CAGE, C1 RamDA-Seq · f37d8599
  TomKellyGenetics authored Apr 30, 2021
  
  f37d8599
Apr 28, 2021
- update documentation to relect new technologies being available · 80febc7c
  TomKellyGenetics authored Apr 28, 2021
  
  80febc7c
- update documentation with subheadings · 60e9ecc8
  TomKellyGenetics authored Apr 28, 2021
  
  60e9ecc8
- remove TSO from ICELL8 and update docs for chemistry · 3941fb43
  TomKellyGenetics authored Apr 28, 2021
  
  3941fb43
- update documentation to clarify non-UMI and dual-indexed technologies · 8ac5f5c2
  TomKellyGenetics authored Apr 28, 2021
  
  8ac5f5c2
Apr 27, 2021
- Merge branch 'non-umi' into dev · 40bda015
  TomKellyGenetics authored Apr 27, 2021
  
  40bda015
- formatting documentation · 71498765
  TomKellyGenetics authored Apr 27, 2021
  
  71498765
- replace UMI with mock (removes hardcoded barcode length) by non-standard eval · d0bb5644
  TomKellyGenetics authored Apr 27, 2021
  
  d0bb5644
- update docs · 3c5e1ae5
  TomKellyGenetics authored Apr 27, 2021
  
  3c5e1ae5
- replace UMI with work (hardcoded for converted barcode length) · 88591108
  TomKellyGenetics authored Apr 27, 2021
  
  88591108
- replace UMI with work (removes hardcoded barcode length) · 746c46bd
  TomKellyGenetics authored Apr 27, 2021
  
  746c46bd
- remove and replace UMI with mock (read-only counts) for any technology · dd79ebe2
  TomKellyGenetics authored Apr 27, 2021
  
  dd79ebe2
- update docs · 414f6634
  TomKellyGenetics authored Apr 27, 2021
  
  414f6634
- update technologies in documentation · 5a56d17a
  TomKellyGenetics authored Apr 27, 2021
  
  5a56d17a
- join I1 barcodes for Quartz-Seq and RamDA-Seq before mock UMI · 1cc911db
  TomKellyGenetics authored Apr 27, 2021
  
  1cc911db
- add mock UMI for Quartz-Seq and RamDA-Seq · 3fb8352b
  TomKellyGenetics authored Apr 27, 2021
  
  3fb8352b

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