Loading launch_universc.sh +3 −3 Original line number Diff line number Diff line Loading @@ -1776,8 +1776,8 @@ else barcodelength=$(($indexlength + $index2length)) if [[ -f ${whitelistdir}/Illumina_dual_barcodes.txt ]];then cat ${whitelistdir}/Illumina_TruSeq_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index1_i7_barcodes.txt | sort | uniq > ${whitelistdir}/Illumina_Index1_i7_barcodes.txt cat ${whitelistdir}/Illumina_TruSeq_Index1_i5_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index1_i5_barcodes.txt | sort | uniq > ${whitelistdir}/Illumina_Index1_i7_barcodes.txt join -j 9999 ${whitelistdir}/Illumina_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Index1_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_dual_barcodes.txt cat ${whitelistdir}/Illumina_TruSeq_Index2_i5_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index2_i5_barcodes.txt | sort | uniq > ${whitelistdir}/Illumina_Index1_i7_barcodes.txt join -j 9999 ${whitelistdir}/Illumina_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Index2_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_dual_barcodes.txt fi barcodefile=${whitelistdir}/Illumina_dual_barcodes.txt Loading Loading @@ -1886,7 +1886,7 @@ else elif [[ "$technology" == "fluidigm-c1" ]] || [[ "$technology" == "c1-cage" ]] || [[ "$technology" == "ramda-seq" ]] || [[ "$technology" == "c1-ramda-seq" ]] || [[ "$technology" == "smartseq2" ]] || [[ "$technology" == "smartseq3" ]]; then if [[ ! -f ${whitelistdir}/Illumina_Nextera_dual_barcodes.txt ]];then #generates all combinations of I1-I2 barcodes join -j 9999 ${whitelistdir}/Illumina_Nextera_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index1_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_Nextera_dual_barcodes.txt join -j 9999 ${whitelistdir}/Illumina_Nextera_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index2_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_Nextera_dual_barcodes.txt fi elif [[ "$technology" == "icell8-full-length" ]]; then if [[ ! -f ${whitelistdir}/SmartSeq_ICELL8_dual_barcodes.txt ]]; then Loading whitelists/Illumina_Nextera_Index1_i5_barcodes.txt→whitelists/Illumina_Nextera_Index2_i5_barcodes.txt +0 −0 File moved. View file whitelists/Illumina_TruSeq_Index1_i5_barcodes.txt→whitelists/Illumina_TruSeq_Index2_i5_barcodes.txt +0 −0 File moved. View file Loading
launch_universc.sh +3 −3 Original line number Diff line number Diff line Loading @@ -1776,8 +1776,8 @@ else barcodelength=$(($indexlength + $index2length)) if [[ -f ${whitelistdir}/Illumina_dual_barcodes.txt ]];then cat ${whitelistdir}/Illumina_TruSeq_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index1_i7_barcodes.txt | sort | uniq > ${whitelistdir}/Illumina_Index1_i7_barcodes.txt cat ${whitelistdir}/Illumina_TruSeq_Index1_i5_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index1_i5_barcodes.txt | sort | uniq > ${whitelistdir}/Illumina_Index1_i7_barcodes.txt join -j 9999 ${whitelistdir}/Illumina_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Index1_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_dual_barcodes.txt cat ${whitelistdir}/Illumina_TruSeq_Index2_i5_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index2_i5_barcodes.txt | sort | uniq > ${whitelistdir}/Illumina_Index1_i7_barcodes.txt join -j 9999 ${whitelistdir}/Illumina_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Index2_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_dual_barcodes.txt fi barcodefile=${whitelistdir}/Illumina_dual_barcodes.txt Loading Loading @@ -1886,7 +1886,7 @@ else elif [[ "$technology" == "fluidigm-c1" ]] || [[ "$technology" == "c1-cage" ]] || [[ "$technology" == "ramda-seq" ]] || [[ "$technology" == "c1-ramda-seq" ]] || [[ "$technology" == "smartseq2" ]] || [[ "$technology" == "smartseq3" ]]; then if [[ ! -f ${whitelistdir}/Illumina_Nextera_dual_barcodes.txt ]];then #generates all combinations of I1-I2 barcodes join -j 9999 ${whitelistdir}/Illumina_Nextera_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index1_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_Nextera_dual_barcodes.txt join -j 9999 ${whitelistdir}/Illumina_Nextera_Index1_i7_barcodes.txt ${whitelistdir}/Illumina_Nextera_Index2_i5_barcodes.txt | sed "s/ //g" > ${whitelistdir}/Illumina_Nextera_dual_barcodes.txt fi elif [[ "$technology" == "icell8-full-length" ]]; then if [[ ! -f ${whitelistdir}/SmartSeq_ICELL8_dual_barcodes.txt ]]; then Loading
whitelists/Illumina_Nextera_Index1_i5_barcodes.txt→whitelists/Illumina_Nextera_Index2_i5_barcodes.txt +0 −0 File moved. View file
whitelists/Illumina_TruSeq_Index1_i5_barcodes.txt→whitelists/Illumina_TruSeq_Index2_i5_barcodes.txt +0 −0 File moved. View file
