Commits · 9fd050fbbf919f13f58056ef517bc3ee3fa4dedf · github_fork / Universc · GitLab

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Apr 27, 2021
- update docs · 9fd050fb
  TomKellyGenetics authored Apr 27, 2021
  
  9fd050fb
- Merge branch 'fix-short-custom-bcs' into dev · a334d023
  TomKellyGenetics authored Apr 27, 2021
  
  a334d023
Apr 21, 2021
- restore checks for detect chemistry and debug · f8ef9b81
  TomKellyGenetics authored Apr 21, 2021
  
  f8ef9b81
Apr 20, 2021
- remove checks for detect chemistry on custom barcode whitelists · 16da5b38
  TomKellyGenetics authored Apr 20, 2021
  
  16da5b38
- detect custom barcode input as variable · 1ac4fe80
  TomKellyGenetics authored Apr 20, 2021
  
  1ac4fe80
Mar 18, 2021
- Merge branch 'master' of github.com:kbattenb/universc into dev · 24a41648
  TomKellyGenetics authored Mar 18, 2021
  
  24a41648
- added extra sequences to trim for TrimSeq4scRNAseq.pl · ef3d5f49
  kai.b authored Mar 18, 2021
  
  ef3d5f49
Mar 09, 2021
- Merge branch 'master' into dev · 275f44c0
  TomKellyGenetics authored Mar 09, 2021
  
  275f44c0
- automatically correct file names if R1 and R2 are missing from file names · 6d051a09
  TomKellyGenetics authored Mar 08, 2021
  
  6d051a09
Mar 08, 2021
- Merge branch 'master' into dev · 2331fc66
  TomKellyGenetics authored Mar 08, 2021
  
  2331fc66
- automatically correct file names if R1 and R2 are missing from file names · 5bf7a9de
  TomKellyGenetics authored Mar 08, 2021
  
  5bf7a9de
- automatically correct file names if R1 and R2 are missing from file names · 6d538545
  TomKellyGenetics authored Mar 08, 2021
  
  6d538545
- correct default read-length for 5' chemistry · 0f520750
  TomKellyGenetics authored Mar 08, 2021
  
  0f520750
- correct default read-length for 5' chemistry · 98a57fe4
  TomKellyGenetics authored Mar 08, 2021
  
  98a57fe4
Mar 04, 2021
- correct links in README · 204a7ff3
  TomKellyGenetics authored Mar 04, 2021
  
  204a7ff3
- correct links in README · 6dd4d225
  TomKellyGenetics authored Mar 04, 2021
  
  6dd4d225
- Merge branch 'master' of github.com:kbattenb/universc · b3035cd3
  TomKellyGenetics authored Mar 04, 2021
  
  b3035cd3
- Merge branch 'master' of github.com:kbattenb/universc into dev · 91b55b38
  TomKellyGenetics authored Mar 04, 2021
  
  91b55b38
- Added SMARTer II A oligo to the list of sequences to be trimmed in the trimming tool · 64e08efd
  kai.b authored Mar 04, 2021
  
  64e08efd
- Merge branch 'master' into dev · afc9d9c2
  TomKellyGenetics authored Mar 04, 2021
  
  afc9d9c2
- Merge branch 'master' of github.com:TomKellyGenetics/universc · 32bf2954
  TomKellyGenetics authored Mar 04, 2021
  
  32bf2954
- Merge branch 'master' of github.com:minoda-lab/universc · 3c810884
  TomKellyGenetics authored Mar 04, 2021
  
  3c810884
- Merge branch 'master' into dev · 074cbb7d
  TomKellyGenetics authored Mar 04, 2021
  
  074cbb7d
- Merge branch 'master' of github.com:kbattenb/universc · 30b2c5fd
  TomKellyGenetics authored Mar 04, 2021
  
  30b2c5fd
- corrected the log output for TrimSeq4scRNAseq.pl to properly output index... · 6aadc510
  kai.b authored Mar 04, 2021
  6aadc510
Feb 27, 2021
- add non-UMI argument to input · 49b276bc
  TomKellyGenetics authored Feb 27, 2021
  
  49b276bc
- add non-UMI argument to docs · 3d65022e
  TomKellyGenetics authored Feb 27, 2021
  
  3d65022e
- increment version · 17c8b9e2
  TomKellyGenetics authored Feb 27, 2021
  
  17c8b9e2
Feb 26, 2021
- add subroutine for non-UMI Smart-Seq2 technology · 13a27721
  TomKellyGenetics authored Feb 26, 2021
  
  13a27721
- pass arguments for tag and output for TSO and filtering scripts · ae020e7d
  TomKellyGenetics authored Feb 26, 2021
  
  ae020e7d
- script to fill mock UMIs for non-UMI techniques · bb757935
  kai.b authored Feb 26, 2021
  
  bb757935
- update docs for dev version · 48d4c40a
  TomKellyGenetics authored Feb 26, 2021
  
  48d4c40a
- Merge branch 'master' of github.com:TomKellyGenetics/universc into stable · 03ba23dd
  TomKellyGenetics authored Feb 26, 2021
  
  03ba23dd
- Merge branch 'master' of github.com:kbattenb/universc into stable · 63fab048
  TomKellyGenetics authored Feb 26, 2021
  
  63fab048
- Merge branch 'master' of github.com:kbattenb/universc · 091572f4
  TomKellyGenetics authored Feb 26, 2021
  
  091572f4
- add TSO with non-standard eval based on variables for Smart-Seq3 · 3709da1b
  TomKellyGenetics authored Feb 26, 2021
  
  3709da1b
- add TSO with hardcoded barcode configuration for Smart-Seq3 · d6269f87
  TomKellyGenetics authored Feb 26, 2021
  
  d6269f87
Feb 25, 2021
- correct default chemistry for 5' with Smart-Seq · ef4acd21
  TomKellyGenetics authored Feb 25, 2021
  
  ef4acd21
- account for longer UMI than compatible while preserving R1 for 5' chemistry · 079fbca5
  TomKellyGenetics authored Feb 25, 2021
  
  079fbca5
- define UMI subroutine · 4b44da82
  TomKellyGenetics authored Feb 25, 2021
  
  4b44da82

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