Loading README.Rmd +2 −0 Original line number Original line Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading README.html +2 −0 Original line number Original line Diff line number Diff line Loading @@ -503,6 +503,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading README.md +2 −0 Original line number Original line Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading launch_universc.sh +2 −0 Original line number Original line Diff line number Diff line Loading @@ -234,6 +234,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading man/launch_universc.sh +4 −0 Original line number Original line Diff line number Diff line Loading @@ -262,6 +262,10 @@ Provides a conversion script to run multiple technologies and custom libraries w This provides more accurate summary statistics than Cell Ranger (which uses an average across cells This provides more accurate summary statistics than Cell Ranger (which uses an average across cells that are filtered out). that are filtered out). --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence so that each read has a unique UMI. --setup --setup Set up whitelists for compatibility with new technology. Called automatically when a new Set up whitelists for compatibility with new technology. Called automatically when a new technology is run and no other technology is running. Recommended to run before submitting technology is run and no other technology is running. Recommended to run before submitting Loading Loading
README.Rmd +2 −0 Original line number Original line Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading
README.html +2 −0 Original line number Original line Diff line number Diff line Loading @@ -503,6 +503,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading
README.md +2 −0 Original line number Original line Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading
launch_universc.sh +2 −0 Original line number Original line Diff line number Diff line Loading @@ -234,6 +234,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists --as-is Skips the FASTQ file conversion if the file already exists Loading
man/launch_universc.sh +4 −0 Original line number Original line Diff line number Diff line Loading @@ -262,6 +262,10 @@ Provides a conversion script to run multiple technologies and custom libraries w This provides more accurate summary statistics than Cell Ranger (which uses an average across cells This provides more accurate summary statistics than Cell Ranger (which uses an average across cells that are filtered out). that are filtered out). --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence so that each read has a unique UMI. --setup --setup Set up whitelists for compatibility with new technology. Called automatically when a new Set up whitelists for compatibility with new technology. Called automatically when a new technology is run and no other technology is running. Recommended to run before submitting technology is run and no other technology is running. Recommended to run before submitting Loading
