Loading README.Rmd +2 −0 Original line number Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading README.html +2 −0 Original line number Diff line number Diff line Loading @@ -503,6 +503,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading README.md +2 −0 Original line number Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading launch_universc.sh +2 −0 Original line number Diff line number Diff line Loading @@ -234,6 +234,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading man/launch_universc.sh +4 −0 Original line number Diff line number Diff line Loading @@ -262,6 +262,10 @@ Provides a conversion script to run multiple technologies and custom libraries w This provides more accurate summary statistics than Cell Ranger (which uses an average across cells that are filtered out). --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence so that each read has a unique UMI. --setup Set up whitelists for compatibility with new technology. Called automatically when a new technology is run and no other technology is running. Recommended to run before submitting Loading Loading
README.Rmd +2 −0 Original line number Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading
README.html +2 −0 Original line number Diff line number Diff line Loading @@ -503,6 +503,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading
README.md +2 −0 Original line number Diff line number Diff line Loading @@ -1028,6 +1028,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading
launch_universc.sh +2 −0 Original line number Diff line number Diff line Loading @@ -234,6 +234,8 @@ Mandatory arguments to long options are mandatory for short options too. -p, --per-cell-data Generates a file with basic run statistics along with per-cell data --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence --setup Set up whitelists for compatibility with new technology and exit --as-is Skips the FASTQ file conversion if the file already exists Loading
man/launch_universc.sh +4 −0 Original line number Diff line number Diff line Loading @@ -262,6 +262,10 @@ Provides a conversion script to run multiple technologies and custom libraries w This provides more accurate summary statistics than Cell Ranger (which uses an average across cells that are filtered out). --non-umi or --read-only Force counting reads by adding or replacing UMI with a mock sequence so that each read has a unique UMI. --setup Set up whitelists for compatibility with new technology. Called automatically when a new technology is run and no other technology is running. Recommended to run before submitting Loading
