Commits · 7a68a2889b4012d5415edf4fc7033c8b43ee9480 · github_fork / Universc · GitLab

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May 10, 2021
- Merge branch 'dev' of github.com:kbattenb/universc into dev · 7a68a288
  TomKellyGenetics authored May 10, 2021
  
  7a68a288
- Merge branch 'dev' of github.com:minoda-lab/universc into dev · ed34f993
  kai.b authored May 10, 2021
  
  ed34f993
- minor bug fix for basic stats. · 12ebe2de
  kai.b authored May 10, 2021
  
  12ebe2de
- update documentation for 1.1.0 release · ae171103
  TomKellyGenetics authored May 10, 2021
  
  ae171103
- Merge branch 'master' of github.com:TomKellyGenetics/universc into dev · accdcd30
  TomKellyGenetics authored May 10, 2021
  
  accdcd30
- correct syntax bugs · c32f6874
  TomKellyGenetics authored May 10, 2021
  
  c32f6874
May 06, 2021
- update subroutines for ICELL8 5' scRNA and Full length Smart-Seq ICELL8 cx · e0bfbf62
  TomKellyGenetics authored May 06, 2021
  
  e0bfbf62
- add inputs and barcode whitelists for ICELL8 5' scRNA (TCR) and SMART-Seq ICELL8 full-length scRNA · e04d06e7
  TomKellyGenetics authored May 06, 2021
  
  e04d06e7
- add inputs and barcode whitelists for ICELL8 5' scRNA (TCR) and SMART-Seq ICELL8 full-length scRNA · d7b33a8f
  TomKellyGenetics authored May 06, 2021
  
  d7b33a8f
- update smart-seq3 default barcodes to nextera dual indexes · 752d4514
  TomKellyGenetics authored May 06, 2021
  
  752d4514
- test smart-seq3 with custom barcode whitelists · 3c15bcd7
  TomKellyGenetics authored May 06, 2021
  
  3c15bcd7
- custom barcodes with Aligent SureSelectXT Low Input for Smart-Seq3 test · cdb980d9
  TomKellyGenetics authored May 06, 2021
  
  cdb980d9
- support 5' chemistry with C1 CAGE with TSO conversion · 85db86af
  TomKellyGenetics authored Apr 30, 2021
  
  85db86af
- automatic detection of barcode length from index files for C1, Quartz-Seq and RamDA-Seq · 7d18236f
  TomKellyGenetics authored Apr 30, 2021
  7d18236f
Apr 30, 2021
- add default indexes and subroutines for QuartzSeq TruSeq and C1 dual-indexed Nextera libraries · 2efa7307
  TomKellyGenetics authored Apr 30, 2021
  
  2efa7307
- add inputs for C1 Fluidigm RNA-Seq, C1 CAGE, C1 RamDA-Seq · f37d8599
  TomKellyGenetics authored Apr 30, 2021
  
  f37d8599
Apr 28, 2021
- update documentation to relect new technologies being available · 80febc7c
  TomKellyGenetics authored Apr 28, 2021
  
  80febc7c
- update documentation with subheadings · 60e9ecc8
  TomKellyGenetics authored Apr 28, 2021
  
  60e9ecc8
- remove TSO from ICELL8 and update docs for chemistry · 3941fb43
  TomKellyGenetics authored Apr 28, 2021
  
  3941fb43
- update documentation to clarify non-UMI and dual-indexed technologies · 8ac5f5c2
  TomKellyGenetics authored Apr 28, 2021
  
  8ac5f5c2
Apr 27, 2021
- Merge branch 'non-umi' into dev · 40bda015
  TomKellyGenetics authored Apr 27, 2021
  
  40bda015
- formatting documentation · 71498765
  TomKellyGenetics authored Apr 27, 2021
  
  71498765
- replace UMI with mock (removes hardcoded barcode length) by non-standard eval · d0bb5644
  TomKellyGenetics authored Apr 27, 2021
  
  d0bb5644
- update docs · 3c5e1ae5
  TomKellyGenetics authored Apr 27, 2021
  
  3c5e1ae5
- replace UMI with work (hardcoded for converted barcode length) · 88591108
  TomKellyGenetics authored Apr 27, 2021
  
  88591108
- replace UMI with work (removes hardcoded barcode length) · 746c46bd
  TomKellyGenetics authored Apr 27, 2021
  
  746c46bd
- remove and replace UMI with mock (read-only counts) for any technology · dd79ebe2
  TomKellyGenetics authored Apr 27, 2021
  
  dd79ebe2
- update docs · 414f6634
  TomKellyGenetics authored Apr 27, 2021
  
  414f6634
- update technologies in documentation · 5a56d17a
  TomKellyGenetics authored Apr 27, 2021
  
  5a56d17a
- join I1 barcodes for Quartz-Seq and RamDA-Seq before mock UMI · 1cc911db
  TomKellyGenetics authored Apr 27, 2021
  
  1cc911db
- add mock UMI for Quartz-Seq and RamDA-Seq · 3fb8352b
  TomKellyGenetics authored Apr 27, 2021
  
  3fb8352b
- add support for non-UMI technologies (e.g., Quartz-Seq, RamDA-Seq) · 7e961900
  TomKellyGenetics authored Apr 27, 2021
  
  7e961900
- document inputs for non-UMI technologies · cbbd55bc
  TomKellyGenetics authored Apr 27, 2021
  
  cbbd55bc
- formmating documentation · e2d0d0d5
  TomKellyGenetics authored Apr 27, 2021
  
  e2d0d0d5
- replace inflated UMI for ICELL8 v2 (non-UMI) with mock to count reads · ab8f1fc6
  TomKellyGenetics authored Apr 27, 2021
  
  ab8f1fc6
- add subroutine for ICELL8 v2 (non-UMI) · 702bf5b6
  TomKellyGenetics authored Apr 27, 2021
  
  702bf5b6
- update documentation for non-UMI · bdc460fd
  TomKellyGenetics authored Apr 27, 2021
  
  bdc460fd
- add inputs for non-umi technologies · e70a761b
  TomKellyGenetics authored Apr 27, 2021
  
  e70a761b
- Merge branch 'enhance-sci-seq' into dev · 1fcd79eb
  TomKellyGenetics authored Apr 27, 2021
  
  1fcd79eb
- add automatic generation of missing index (I1) file from FASTQ headers · 2ba3983c
  TomKellyGenetics authored Apr 27, 2021
  
  2ba3983c

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