Merge branch 'enhance-sci-seq' into dev (1fcd79eb) · Commits · github_fork / Universc

launch_universc.sh

+0 −5

Original line number	Original line	Diff line number	Diff line
	@@ -3029,13 +3029,8 @@ else

	echo " ...concatencate barcodes to R1 from I1 and I2 index files"		echo " ...concatencate barcodes to R1 from I1 and I2 index files"
	# concatenate barcocdes from dual indexes to R1 as barcode (bases 1-16)		# concatenate barcocdes from dual indexes to R1 as barcode (bases 1-16)
	<<<<<<< HEAD
	perl sub/ConcatenateDualIndexBarcodes.pl --additive=${convI1} --additive=${convI2} --ref_fastq=${convR1} --tag="ATTGCGCAATG" --out_dir=$crIN		perl sub/ConcatenateDualIndexBarcodes.pl --additive=${convI1} --additive=${convI2} --ref_fastq=${convR1} --tag="ATTGCGCAATG" --out_dir=$crIN

	=======
	perl sub/ConcatenateDualIndexBarcodes.pl --additive=${convI1} --additive=${convI2} --ref_fastq=${convR1} --out_dir=$crIN

	>>>>>>> c38e32ea3cb07d74951b60e666b6885377f7b77a
	#returns a combined R1 file with I1-I2-R1 concatenated (I1 and I2 are R1 barcode)		#returns a combined R1 file with I1-I2-R1 concatenated (I1 and I2 are R1 barcode)
	mv $crIN/Concatenated_File.fastq ${convR1}		mv $crIN/Concatenated_File.fastq ${convR1}