Commits · 6d538545809df037d15d2d197ccda1136b9b9e46 · github_fork / Universc · GitLab

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Mar 08, 2021
- automatically correct file names if R1 and R2 are missing from file names · 6d538545
  TomKellyGenetics authored Mar 08, 2021
  
  6d538545
- correct default read-length for 5' chemistry · 98a57fe4
  TomKellyGenetics authored Mar 08, 2021
  
  98a57fe4
Mar 04, 2021
- correct links in README · 6dd4d225
  TomKellyGenetics authored Mar 04, 2021
  
  6dd4d225
- Merge branch 'master' of github.com:kbattenb/universc into dev · 91b55b38
  TomKellyGenetics authored Mar 04, 2021
  
  91b55b38
- Added SMARTer II A oligo to the list of sequences to be trimmed in the trimming tool · 64e08efd
  kai.b authored Mar 04, 2021
  
  64e08efd
- Merge branch 'master' into dev · afc9d9c2
  TomKellyGenetics authored Mar 04, 2021
  
  afc9d9c2
- Merge branch 'master' of github.com:TomKellyGenetics/universc · 32bf2954
  TomKellyGenetics authored Mar 04, 2021
  
  32bf2954
- Merge branch 'master' of github.com:minoda-lab/universc · 3c810884
  TomKellyGenetics authored Mar 04, 2021
  
  3c810884
- Merge branch 'master' into dev · 074cbb7d
  TomKellyGenetics authored Mar 04, 2021
  
  074cbb7d
- Merge branch 'master' of github.com:kbattenb/universc · 30b2c5fd
  TomKellyGenetics authored Mar 04, 2021
  
  30b2c5fd
- corrected the log output for TrimSeq4scRNAseq.pl to properly output index... · 6aadc510
  kai.b authored Mar 04, 2021
  6aadc510
Feb 27, 2021
- add non-UMI argument to input · 49b276bc
  TomKellyGenetics authored Feb 27, 2021
  
  49b276bc
- add non-UMI argument to docs · 3d65022e
  TomKellyGenetics authored Feb 27, 2021
  
  3d65022e
- increment version · 17c8b9e2
  TomKellyGenetics authored Feb 27, 2021
  
  17c8b9e2
Feb 26, 2021
- add subroutine for non-UMI Smart-Seq2 technology · 13a27721
  TomKellyGenetics authored Feb 26, 2021
  
  13a27721
- pass arguments for tag and output for TSO and filtering scripts · ae020e7d
  TomKellyGenetics authored Feb 26, 2021
  
  ae020e7d
- script to fill mock UMIs for non-UMI techniques · bb757935
  kai.b authored Feb 26, 2021
  
  bb757935
- update docs for dev version · 48d4c40a
  TomKellyGenetics authored Feb 26, 2021
  
  48d4c40a
- Merge branch 'master' of github.com:TomKellyGenetics/universc into stable · 03ba23dd
  TomKellyGenetics authored Feb 26, 2021
  
  03ba23dd
- Merge branch 'master' of github.com:kbattenb/universc into stable · 63fab048
  TomKellyGenetics authored Feb 26, 2021
  
  63fab048
- Merge branch 'master' of github.com:kbattenb/universc · 091572f4
  TomKellyGenetics authored Feb 26, 2021
  
  091572f4
- add TSO with non-standard eval based on variables for Smart-Seq3 · 3709da1b
  TomKellyGenetics authored Feb 26, 2021
  
  3709da1b
- add TSO with hardcoded barcode configuration for Smart-Seq3 · d6269f87
  TomKellyGenetics authored Feb 26, 2021
  
  d6269f87
Feb 25, 2021
- correct default chemistry for 5' with Smart-Seq · ef4acd21
  TomKellyGenetics authored Feb 25, 2021
  
  ef4acd21
- account for longer UMI than compatible while preserving R1 for 5' chemistry · 079fbca5
  TomKellyGenetics authored Feb 25, 2021
  
  079fbca5
- define UMI subroutine · 4b44da82
  TomKellyGenetics authored Feb 25, 2021
  
  4b44da82
- adjust UMI while preserving R1 for 5' chemistry · 81790e1e
  TomKellyGenetics authored Feb 25, 2021
  
  81790e1e
- disable trimming UMI for 5' · 4233dcf7
  TomKellyGenetics authored Feb 25, 2021
  
  4233dcf7
Feb 22, 2021
- Updating TrimSeq4scRNAseq.pl to allow multiple indices · e91c0d2e
  kai.b authored Feb 22, 2021
  
  e91c0d2e
Feb 18, 2021
- Merge branch 'master' of github.com:kbattenb/universc · 9e8bbeb0
  TomKellyGenetics authored Feb 18, 2021
  
  9e8bbeb0
- Minor fix for potential bug. · 2fe0483c
  kai.b authored Feb 18, 2021
  
  2fe0483c
Feb 17, 2021
- update parameters for separate Smart-Seq2 and Smart-Seq3 presets · ade99d33
  TomKellyGenetics authored Feb 17, 2021
  
  ade99d33
- adapt five prime chemistry for Smart-Seq3 · 307df2be
  TomKellyGenetics authored Feb 17, 2021
  
  307df2be
- ExtractBasicStats.pl minor (but significant) bug fix. · dfbd474e
  kai.b authored Feb 17, 2021
  
  dfbd474e
Feb 06, 2021
- update badges · e2f5dca1
  TomKellyGenetics authored Feb 06, 2021
  
  e2f5dca1
- configure tests with GitHub Actions · e2c5c806
  TomKellyGenetics authored Feb 06, 2021
  
  e2c5c806
- configure tests with GitHub Actions · 7612e355
  TomKellyGenetics authored Feb 06, 2021
  
  7612e355
- pull branch into testing environment for GitHub Actions within test job · 9970525c
  TomKellyGenetics authored Feb 06, 2021
  
  9970525c
Feb 05, 2021
- pull branch into testing environment for GitHub Actions within test job · 6afe0d10
  TomKellyGenetics authored Feb 05, 2021
  
  6afe0d10
- configure tests with GitHub Actions · cb52355b
  TomKellyGenetics authored Feb 05, 2021
  
  cb52355b

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