Commits · b06aa630e2b3179cc880fdd30948d2df4a4ac438 · github_fork / Chromap

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May 15, 2021
- Update README.md · b06aa630
  Li Song authored May 14, 2021
  
  b06aa630
May 12, 2021
- Update README.md · 1c99f03c
  Li Song authored May 12, 2021
  
  1c99f03c
- Update README · a9e00a9e
  Li authored May 12, 2021
  
  a9e00a9e
- Update README · 39b7512c
  Li authored May 12, 2021
  
  39b7512c
- Use smaller test data · edc3cd6c
  Haowen Zhang authored May 11, 2021
  
  edc3cd6c
- Fix an issue when occ table size is 0 · 7820fe29
  Haowen Zhang authored May 11, 2021
  
  7820fe29
May 11, 2021
- Update README · c40d5f15
  Li authored May 11, 2021
  
  c40d5f15
- Update README · 228d320c
  Li authored May 11, 2021
  
  228d320c
- Added test data · a54610ff
  Haowen Zhang authored May 11, 2021
  
  a54610ff
- Set default output format as BED · 77663b24
  Haowen Zhang authored May 11, 2021
  
  77663b24
- Fix a link · 3fe5651d
  Haowen authored May 11, 2021
  
  3fe5651d
- Update readme · e1c043c0
  Haowen authored May 11, 2021
  
  e1c043c0
- Changed default parameters · 491e13c5
  Haowen Zhang authored May 10, 2021
  
  491e13c5
May 05, 2021
- Print barcode correction parameters · be08c2d4
  Haowen Zhang authored May 04, 2021
  
  be08c2d4
- Add barcode correction parameters · f28d4df1
  Haowen Zhang authored May 04, 2021
  
  f28d4df1
May 04, 2021
- Adjust the MAPQ for split alignment · ed30705d
  Li authored May 03, 2021
  
  ed30705d
May 01, 2021
- Tune MAPQ for hic · 4b9733f5
  Haowen Zhang authored Apr 30, 2021
  
  4b9733f5
- Break ties in bulk dedup only for single cell data · c9635713
  Haowen Zhang authored Apr 30, 2021
  
  c9635713
Apr 30, 2021
- Barcode correction up to 2 hamming distance · b4aa4d15
  Haowen Zhang authored Apr 29, 2021
  
  b4aa4d15
Apr 28, 2021
- Fix an issue in barcode filtering · 07f7fd7d
  Haowen Zhang authored Apr 27, 2021
  
  07f7fd7d
- Support barcode filtering by whitelist · ff50bd20
  Haowen Zhang authored Apr 27, 2021
  
  ff50bd20
- Use all barcodes to compute barcode abundance · 07cb578d
  Haowen Zhang authored Apr 27, 2021
  
  07cb578d
Apr 27, 2021
- Fix a bug in bulk dedup · d32678df
  Haowen Zhang authored Apr 27, 2021
  
  d32678df
- Fix a bug in bulk dedup · 0999cc45
  Haowen Zhang authored Apr 26, 2021
  
  0999cc45
- Improved barcode correction · a95474e3
  Haowen Zhang authored Apr 26, 2021
  
  a95474e3
- Bulk dedup for low mem mode · 53a9a9f1
  Haowen Zhang authored Apr 26, 2021
  
  53a9a9f1
Apr 26, 2021
- Fix a potential overflow · 617ef157
  Haowen Zhang authored Apr 25, 2021
  
  617ef157
Apr 24, 2021
- Scale up MAPQ · e9e5680c
  Haowen Zhang authored Apr 24, 2021
  
  e9e5680c
Apr 23, 2021
- Improve MAPQ · f0152318
  Haowen Zhang authored Apr 23, 2021
  
  f0152318
Apr 19, 2021
- Tune MAPQ · b04fe5de
  Haowen Zhang authored Apr 19, 2021
  
  b04fe5de
- Fix a data type issue. · e836e2c2
  Li authored Apr 18, 2021
  
  e836e2c2
- Tune MAPQ · cace2324
  Haowen Zhang authored Apr 18, 2021
  
  cace2324
Apr 18, 2021
- Fix sam mapping positions · 8edb2a56
  Haowen Zhang authored Apr 17, 2021
  
  8edb2a56
Apr 17, 2021
- Use MAPQ to filter untrustworhty mate pair rescue instead of hard removing. · 84643789
  Li authored Apr 16, 2021
  
  84643789
- Relax the criterion for cancelling supplement candidate · 8e586bd1
  Li authored Apr 16, 2021
  
  8e586bd1
Apr 16, 2021
- Fix an strand bias issue when supplementing mate pairs · 685da8b0
  Li authored Apr 15, 2021
  
  685da8b0
- Merge branch 'master' of github.com:haowenz/chromap · 4caa2dda
  Haowen Zhang authored Apr 15, 2021
  
  4caa2dda
- Improve MAPQ · b5da1f21
  Haowen Zhang authored Apr 15, 2021
  
  b5da1f21
- Stable SAM sorting · d62cc773
  Haowen Zhang authored Apr 15, 2021
  
  d62cc773
Apr 14, 2021
- Fix issues in PAF low mem mode · 67395f8e
  Haowen Zhang authored Apr 14, 2021
  
  67395f8e

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Commits · b06aa630e2b3179cc880fdd30948d2df4a4ac438