Commits · 968032d4fd7435ed973c54eb0e4b4850e4d0dbc5 · Chaos / chaos.juicer

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Feb 25, 2019
- Merge branch 'master' of https://github.com/aidenlab/juicer into PBS_fix · 968032d4
  Nikos Sidiropoulos authored Feb 25, 2019
  
  968032d4
- Account for gzipped fastq files · ba6d69d8
  Nikos Sidiropoulos authored Feb 25, 2019
  
  ba6d69d8
- Tidy code · 1cc6c95a
  Nikos Sidiropoulos authored Feb 25, 2019
  
  1cc6c95a
- Tidy code · 4851e365
  Nikos Sidiropoulos authored Feb 25, 2019
  
  4851e365
- Make executable · da5002cf
  Nikos Sidiropoulos authored Feb 25, 2019
  
  da5002cf
- Add juicer_tools script · cebaffcd
  Nikos Sidiropoulos authored Feb 25, 2019
  
  cebaffcd
- Indent lines after if-else statements · 6b6a0748
  Nikos Sidiropoulos authored Feb 25, 2019
  
  6b6a0748
- Set delimiter to nothing when pasting fastq files · 06475c3c
  Nikos Sidiropoulos authored Feb 25, 2019
  
  06475c3c
- Make executable · 2817f1a6
  Nikos Sidiropoulos authored Feb 25, 2019
  
  2817f1a6
Feb 02, 2019
- Merge pull request #96 from Zojka/Zojka-patch-1 · 43cc35ff
  nchernia authored Feb 01, 2019
  43cc35ff
Jan 30, 2019
- multithreading for "bwa aln" · 7b8a26b1
  Zojka authored Jan 30, 2019
  7b8a26b1
Jan 08, 2019
- Merge pull request #92 from jemilianosf/patch-1 · 84f6957a
  nchernia authored Jan 07, 2019
  84f6957a
- Update calculate_map_resolution.sh · 124cbd56
  jemilianosf authored Jan 07, 2019
  124cbd56
Aug 05, 2018
- Update README.md · 50e7591c
  Muhammad Saad Shamim authored Aug 04, 2018
  
  50e7591c
May 14, 2018
- comment out unecessary · 590d7d0e
  nchernia authored May 14, 2018
  
  590d7d0e
- adding back in done split dir · df1b25f4
  nchernia authored May 14, 2018
  
  df1b25f4
Apr 07, 2018
- updating CPU version of mega to the more modern version · 1ef023d1
  nchernia authored Apr 06, 2018
  
  1ef023d1
Apr 06, 2018
- Mainly changing calls to qsub for new required flag l_hrt · 2b8a2a33
  nchernia authored Apr 06, 2018
  
  2b8a2a33
- Small updates to mega with exit codes; updating chmod modes of files · 09f63c40
  nchernia authored Apr 06, 2018
  
  09f63c40
- Adding stages and some other checks to the mega script · 6999168b
  nchernia authored Apr 06, 2018
  
  6999168b
- Bug fixes: postproc stage bug and count ligations finishing quickly · 6ec734a0
  nchernia authored Apr 06, 2018
  
  6ec734a0
Mar 21, 2018
- Merge pull request #54 from macroscian/patch-1 · d48dd4b6
  nchernia authored Mar 21, 2018
  d48dd4b6
- Escape errorfile, in case it has dots in it · 82515536
  macroscian authored Mar 21, 2018
  82515536
Dec 01, 2017
- Fixed HIC_tmp hardcoding · d3ee11b5
  nchernia authored Nov 30, 2017
  
  d3ee11b5
Nov 09, 2017
- Merge pull request #40 from mzhibo/master · d6550a32
  Aiden Lab authored Nov 08, 2017
  d6550a32
Nov 05, 2017
- moved up LC command so sort is correct · e2751746
  nchernia authored Nov 04, 2017
  
  e2751746
Oct 25, 2017
- Revert "trying parallelization of dup removal" · 74570dfd
  Aiden Lab authored Oct 25, 2017
  74570dfd
Oct 11, 2017
- trying parallelization of dup removal · 28b72803
  Aiden Lab authored Oct 10, 2017
  
  28b72803
Sep 29, 2017
- bug fix on job dependency issue · 792c3c97
  mzhibo authored Sep 28, 2017
  792c3c97
- Delete postprocessing.sh · acaa39e1
  mzhibo authored Sep 28, 2017
  
  acaa39e1
- Delete juicer.sh · e2306072
  mzhibo authored Sep 28, 2017
  
  e2306072
- Delete launch_stats.sh · 767defcd
  mzhibo authored Sep 28, 2017
  
  767defcd
- file relocation & bug fix · b1db6a0b
  mzhibo authored Sep 28, 2017
  b1db6a0b
Sep 28, 2017
- Merge pull request #37 from mzhibo/master · 89fbc4e6
  Aiden Lab authored Sep 27, 2017
  89fbc4e6
- Bug fix: potential dependency failure due to jobID · 3eb7ecb1
  mzhibo authored Sep 27, 2017
  3eb7ecb1
- Delete postprocessing.sh · 4015b190
  mzhibo authored Sep 27, 2017
  
  4015b190
- Delete juicer.sh · 6e3e1fbd
  mzhibo authored Sep 27, 2017
  
  6e3e1fbd
- Delete launch_stats.sh · 96a5354b
  mzhibo authored Sep 27, 2017
  
  96a5354b
Sep 26, 2017
- fixing bug in SLURM juicer when ligation flag -b sent in; updating mega in... · d1c95feb
  nchernia authored Sep 26, 2017
  d1c95feb
- Merge pull request #35 from mzhibo/master · e3a0483b
  Aiden Lab authored Sep 25, 2017
  e3a0483b

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Commits · 968032d4fd7435ed973c54eb0e4b4850e4d0dbc5