adding back in done split dir (df1b25f4) · Commits · Chaos / chaos.juicer

SLURM/scripts/juicer.sh

+6 −2

Changes for SLURM/scripts/juicer.sh: 6 added lines, 2 removed lines.
Original line number	Diff line number	Diff line
		@@ -835,7 +835,8 @@ then
		sbatch_wait=""
		fi

		# merge the sorted files into one giant file that is also sorted. jid=`sbatch <<- MRGSRT \| egrep -o -e "\b[0-9]+$"
		# merge the sorted files into one giant file that is also sorted.
		jid=`sbatch <<- MRGSRT \| egrep -o -e "\b[0-9]+$"

		if [ $isVoltron -eq 1 ]
		then
		@@ -863,7 +864,10 @@ then
		exit 1
		fi
		export LC_COLLATE=C

		if [ -d $donesplitdir ]
		then
		mv $donesplitdir/* $splitdir/.
		fi
		if [ $isRice -eq 1 ]
		then
		if ! ${juiceDir}/scripts/sort --parallel=48 -S8G -T ${tmpdir} -m -k2,2d -k6,6d -k4,4n -k8,8n -k1,1n -k5,5n -k3,3n $splitdir/*.sort.txt > $outputdir/merged_sort.txt