Loading SLURM/scripts/juicer.sh +1 −1 Changes for SLURM/scripts/juicer.sh: 1 added line, 1 removed line. Original line number Diff line number Diff line Loading @@ -994,7 +994,7 @@ then date ls -l ${outputdir}/merged_sort.txt | awk '{printf("%s ", \\\$5)}' > $debugdir/dupcheck-${groupname} ls -l ${outputdir}/merged_nodups.txt ${outputdir}/dups.txt ${outputdir}/opt_dups.txt | awk '{sum = sum + \\\$5}END{print sum}' >> $debugdir/dupcheck-${groupname} awk 'NR==1{if (NF == 2 && \\\$1 == \\\$2){print "Sorted and dups/no dups files add up"}else{print "Problem" >> ${errorfile}; print "***! Error! The sorted file and dups/no dups files do not add up, or were empty."}}' $debugdir/dupcheck-${groupname} awk 'NR==1{if (NF == 2 && \\\$1 == \\\$2){print "Sorted and dups/no dups files add up"}else{print "Problem" >> "${errorfile}"; print "***! Error! The sorted file and dups/no dups files do not add up, or were empty."}}' $debugdir/dupcheck-${groupname} date DUPCHECK` sbatch_wait="#SBATCH -d afterok:$jid" Loading Loading
SLURM/scripts/juicer.sh +1 −1 Changes for SLURM/scripts/juicer.sh: 1 added line, 1 removed line. Original line number Diff line number Diff line Loading @@ -994,7 +994,7 @@ then date ls -l ${outputdir}/merged_sort.txt | awk '{printf("%s ", \\\$5)}' > $debugdir/dupcheck-${groupname} ls -l ${outputdir}/merged_nodups.txt ${outputdir}/dups.txt ${outputdir}/opt_dups.txt | awk '{sum = sum + \\\$5}END{print sum}' >> $debugdir/dupcheck-${groupname} awk 'NR==1{if (NF == 2 && \\\$1 == \\\$2){print "Sorted and dups/no dups files add up"}else{print "Problem" >> ${errorfile}; print "***! Error! The sorted file and dups/no dups files do not add up, or were empty."}}' $debugdir/dupcheck-${groupname} awk 'NR==1{if (NF == 2 && \\\$1 == \\\$2){print "Sorted and dups/no dups files add up"}else{print "Problem" >> "${errorfile}"; print "***! Error! The sorted file and dups/no dups files do not add up, or were empty."}}' $debugdir/dupcheck-${groupname} date DUPCHECK` sbatch_wait="#SBATCH -d afterok:$jid" Loading
