Loading PBS/scripts/split_rmdups.awk +1 −1 Changes for PBS/scripts/split_rmdups.awk: 1 added line, 1 removed line. Original line number Diff line number Diff line Loading @@ -95,7 +95,7 @@ END { print "below is the _catsplit id"; print jID_catsplit; print "submitting _rmsplit jobs"; sysstring=sprintf("qsub -l %s -o %s_rmsplit.log -j oe -q %s -N RmSplt%s <<-W depend=afterok:%s <<-EOF\n rm %s/*_msplit*_optdups.txt; rm %s/*_msplit*_dups.txt; rm %s/*_msplit*_merged_nodups.txt; rm %s/split*;\nEOF", walltime, outfile, queue, groupname,jID_catsplit, dir, dir, dir, dir); sysstring=sprintf("qsub -l %s -o %s_rmsplit.log -j oe -q %s -N RmSplt%s -W depend=afterok:%s <<-EOF\n rm %s/*_msplit*_optdups.txt; rm %s/*_msplit*_dups.txt; rm %s/*_msplit*_merged_nodups.txt; rm %s/split*;\nEOF", walltime, outfile, queue, groupname,jID_catsplit, dir, dir, dir, dir); system(sysstring); cmd=sprintf("qstat | grep RmSplt%s | cut -d ' ' -f 1",groupname); cmd |& getline jID_rmsplit; Loading Loading
PBS/scripts/split_rmdups.awk +1 −1 Changes for PBS/scripts/split_rmdups.awk: 1 added line, 1 removed line. Original line number Diff line number Diff line Loading @@ -95,7 +95,7 @@ END { print "below is the _catsplit id"; print jID_catsplit; print "submitting _rmsplit jobs"; sysstring=sprintf("qsub -l %s -o %s_rmsplit.log -j oe -q %s -N RmSplt%s <<-W depend=afterok:%s <<-EOF\n rm %s/*_msplit*_optdups.txt; rm %s/*_msplit*_dups.txt; rm %s/*_msplit*_merged_nodups.txt; rm %s/split*;\nEOF", walltime, outfile, queue, groupname,jID_catsplit, dir, dir, dir, dir); sysstring=sprintf("qsub -l %s -o %s_rmsplit.log -j oe -q %s -N RmSplt%s -W depend=afterok:%s <<-EOF\n rm %s/*_msplit*_optdups.txt; rm %s/*_msplit*_dups.txt; rm %s/*_msplit*_merged_nodups.txt; rm %s/split*;\nEOF", walltime, outfile, queue, groupname,jID_catsplit, dir, dir, dir, dir); system(sysstring); cmd=sprintf("qstat | grep RmSplt%s | cut -d ' ' -f 1",groupname); cmd |& getline jID_rmsplit; Loading
