Commits · 7d18236f18278eeaf6fcf32f9323858842e542e4 · github_fork / Universc · GitLab

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May 06, 2021
- automatic detection of barcode length from index files for C1, Quartz-Seq and RamDA-Seq · 7d18236f
  TomKellyGenetics authored Apr 30, 2021
  7d18236f
Apr 30, 2021
- add default indexes and subroutines for QuartzSeq TruSeq and C1 dual-indexed Nextera libraries · 2efa7307
  TomKellyGenetics authored Apr 30, 2021
  
  2efa7307
- add inputs for C1 Fluidigm RNA-Seq, C1 CAGE, C1 RamDA-Seq · f37d8599
  TomKellyGenetics authored Apr 30, 2021
  
  f37d8599
Apr 28, 2021
- update documentation to relect new technologies being available · 80febc7c
  TomKellyGenetics authored Apr 28, 2021
  
  80febc7c
- update documentation with subheadings · 60e9ecc8
  TomKellyGenetics authored Apr 28, 2021
  
  60e9ecc8
- remove TSO from ICELL8 and update docs for chemistry · 3941fb43
  TomKellyGenetics authored Apr 28, 2021
  
  3941fb43
- update documentation to clarify non-UMI and dual-indexed technologies · 8ac5f5c2
  TomKellyGenetics authored Apr 28, 2021
  
  8ac5f5c2
Apr 27, 2021
- Merge branch 'non-umi' into dev · 40bda015
  TomKellyGenetics authored Apr 27, 2021
  
  40bda015
- formatting documentation · 71498765
  TomKellyGenetics authored Apr 27, 2021
  
  71498765
- replace UMI with mock (removes hardcoded barcode length) by non-standard eval · d0bb5644
  TomKellyGenetics authored Apr 27, 2021
  
  d0bb5644
- update docs · 3c5e1ae5
  TomKellyGenetics authored Apr 27, 2021
  
  3c5e1ae5
- replace UMI with work (hardcoded for converted barcode length) · 88591108
  TomKellyGenetics authored Apr 27, 2021
  
  88591108
- replace UMI with work (removes hardcoded barcode length) · 746c46bd
  TomKellyGenetics authored Apr 27, 2021
  
  746c46bd
- remove and replace UMI with mock (read-only counts) for any technology · dd79ebe2
  TomKellyGenetics authored Apr 27, 2021
  
  dd79ebe2
- update docs · 414f6634
  TomKellyGenetics authored Apr 27, 2021
  
  414f6634
- update technologies in documentation · 5a56d17a
  TomKellyGenetics authored Apr 27, 2021
  
  5a56d17a
- join I1 barcodes for Quartz-Seq and RamDA-Seq before mock UMI · 1cc911db
  TomKellyGenetics authored Apr 27, 2021
  
  1cc911db
- add mock UMI for Quartz-Seq and RamDA-Seq · 3fb8352b
  TomKellyGenetics authored Apr 27, 2021
  
  3fb8352b
- add support for non-UMI technologies (e.g., Quartz-Seq, RamDA-Seq) · 7e961900
  TomKellyGenetics authored Apr 27, 2021
  
  7e961900
- document inputs for non-UMI technologies · cbbd55bc
  TomKellyGenetics authored Apr 27, 2021
  
  cbbd55bc
- formmating documentation · e2d0d0d5
  TomKellyGenetics authored Apr 27, 2021
  
  e2d0d0d5
- replace inflated UMI for ICELL8 v2 (non-UMI) with mock to count reads · ab8f1fc6
  TomKellyGenetics authored Apr 27, 2021
  
  ab8f1fc6
- add subroutine for ICELL8 v2 (non-UMI) · 702bf5b6
  TomKellyGenetics authored Apr 27, 2021
  
  702bf5b6
- update documentation for non-UMI · bdc460fd
  TomKellyGenetics authored Apr 27, 2021
  
  bdc460fd
- add inputs for non-umi technologies · e70a761b
  TomKellyGenetics authored Apr 27, 2021
  
  e70a761b
- Merge branch 'enhance-sci-seq' into dev · 1fcd79eb
  TomKellyGenetics authored Apr 27, 2021
  
  1fcd79eb
- add automatic generation of missing index (I1) file from FASTQ headers · 2ba3983c
  TomKellyGenetics authored Apr 27, 2021
  
  2ba3983c
- add automatic generation of missing dual index (I1 and I2) files from FASTQ headers · efd20a52
  TomKellyGenetics authored Apr 27, 2021
  
  efd20a52
- Merge branch 'dev' of github.com:TomKellyGenetics/universc into dev · 29582552
  TomKellyGenetics authored Apr 27, 2021
  
  29582552
- Merge branch 'dev' of github.com:kbattenb/universc into dev · d576f87d
  TomKellyGenetics authored Apr 27, 2021
  
  d576f87d
- Merge branch 'master' of github.com:kbattenb/universc into dev · 9d2c7607
  TomKellyGenetics authored Apr 27, 2021
  
  9d2c7607
- update docs · 42915aa8
  TomKellyGenetics authored Apr 27, 2021
  
  42915aa8
- Merge branch 'experimental-technologies' into dev · b21e7554
  TomKellyGenetics authored Apr 27, 2021
  
  b21e7554
- update docs · 9fd050fb
  TomKellyGenetics authored Apr 27, 2021
  
  9fd050fb
- Merge branch 'fix-short-custom-bcs' into dev · a334d023
  TomKellyGenetics authored Apr 27, 2021
  
  a334d023
- add automatic generation of missing index (I1) file from FASTQ headers · fd12cdbb
  TomKellyGenetics authored Apr 27, 2021
  
  fd12cdbb
- add automatic generation of missing dual index (I1 and I2) files from FASTQ headers · 4c587784
  TomKellyGenetics authored Apr 27, 2021
  
  4c587784
Apr 26, 2021
- update documentation to include dual-indexed and combinatorial indexing technologies · a2109417
  TomKellyGenetics authored Apr 26, 2021
  
  a2109417
- update documenatation for plexWell (SeqWell) · 10f89e4d
  TomKellyGenetics authored Apr 26, 2021
  
  10f89e4d
Apr 25, 2021
- add inputs, documentation and subroutine for single-cell combinatorial fluidic... · 4a76769f
  TomKellyGenetics authored Apr 25, 2021
  4a76769f

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