Commits · b602fda20879c38ae43b2256027f9318de14c1fa · github_fork / Chromap

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Jan 05, 2023
- Fix several small issues. · b602fda2
  Li authored Dec 07, 2022
  
  b602fda2
- Preliminary implementation of adding paired-end information in SAM output. · 78967af2
  Li authored Dec 06, 2022
  
  78967af2
Dec 07, 2022
- Update version number. · 29bc02d0
  Li authored Dec 07, 2022
  
  29bc02d0
- Make buffer size a const variable. Check whether gz can reach eof. · eb1cc29c
  Li authored Dec 07, 2022
  
  eb1cc29c
- Allow gzipped barcode whitelist file. · 2c186c86
  Li authored Dec 06, 2022
  
  2c186c86
Dec 01, 2022
- Update issue templates · 00303c67
  Haowen Zhang authored Nov 30, 2022
  00303c67
Nov 28, 2022
- Refactor SequenceBatch. · b3fad740
  Swift Genomics authored Nov 28, 2022
  
  b3fad740
Nov 14, 2022
- Merge branch 'master' into li_dev3 · 1fdd749e
  Li Song authored Nov 13, 2022
  
  1fdd749e
- Better file names for input reads. · db21c154
  Haowen Zhang authored Sep 11, 2022
  
  db21c154
- Fixed a wrong header guard. · bb0c665b
  Swift Genomics authored Nov 13, 2022
  
  bb0c665b
- Refactor the func to generate candidate positions. · 42ed8c27
  Swift Genomics authored Nov 13, 2022
  42ed8c27
- Rename variables. · 6e92241d
  Swift Genomics authored Nov 13, 2022
  
  6e92241d
- Better func names. · 5060f2d4
  Swift Genomics authored Nov 13, 2022
  
  5060f2d4
- Shorten funcs to generate candidate positions. · ec1818b8
  Swift Genomics authored Nov 13, 2022
  
  ec1818b8
- Remove some vertical space and rename variables. · 34b1c779
  Swift Genomics authored Nov 13, 2022
  
  34b1c779
- Shorter func name. · 7cd04fb4
  Swift Genomics authored Nov 12, 2022
  
  7cd04fb4
- Move funcs to index utils. · adba6823
  Swift Genomics authored Nov 12, 2022
  
  adba6823
- Use funcs instead of hardcoded bit ops. · 212145ea
  Swift Genomics authored Nov 12, 2022
  
  212145ea
- Add some comments. · 5f3094ca
  Swift Genomics authored Nov 06, 2022
  
  5f3094ca
- Rename hit.h to minimizer_utils.h. · a019286c
  Swift Genomics authored Nov 06, 2022
  
  a019286c
- Use encapsulated Minimizer funcs. · 6eb7b958
  Swift Genomics authored Nov 06, 2022
  
  6eb7b958
- Add funcs to compute index, position, strand for Minimizer. · 1c23c7e6
  Swift Genomics authored Nov 06, 2022
  
  1c23c7e6
- Fix the comment for loopup table hash func. · 95ddd275
  Swift Genomics authored Nov 05, 2022
  
  95ddd275
- Revise a func for candidate supplement. · 5cab2035
  Haowen Zhang authored Aug 18, 2022
  
  5cab2035
- Rename two funcs to supplement candidates. · 157e5b15
  Haowen Zhang authored Aug 17, 2022
  
  157e5b15
- Update function names. · e5377e79
  Haowen Zhang authored Aug 09, 2022
  
  e5377e79
- A config to pass candidate generating parameters. · e4d29aa9
  Haowen Zhang authored Aug 09, 2022
  
  e4d29aa9
- Rename some variables and remove unused variables. · bcb3bd05
  Haowen Zhang authored Aug 09, 2022
  
  bcb3bd05
- Rename seed hit lists. · 69e2b61f
  Haowen Zhang authored Aug 09, 2022
  
  69e2b61f
- Use functions to convert hits to positions. · a7bf985e
  Haowen Zhang authored Aug 09, 2022
  
  a7bf985e
- Rename a minimizer position as a hit. · 4ffcc6aa
  Haowen Zhang authored Aug 08, 2022
  
  4ffcc6aa
- A func to compute candidate position. · 2f4c02c9
  Haowen Zhang authored Aug 04, 2022
  
  2f4c02c9
- Use a func to perform hit heap merge. · c072a905
  Haowen Zhang authored Jul 27, 2022
  
  c072a905
- Remove code copy in index construction. · abab51fd
  Haowen Zhang authored Jul 26, 2022
  
  abab51fd
- Add more comment for khash in Index. · b7ca7e1f
  Haowen Zhang authored Jul 26, 2022
  
  b7ca7e1f
Nov 04, 2022
- Bump cache version in CI. · 25e218d6
  swiftgenomics authored Nov 03, 2022
  
  25e218d6
- Downgrade openmp version in CI. · 6864f7fa
  swiftgenomics authored Nov 03, 2022
  
  6864f7fa
- Update openmp version · eb30db9b
  swiftgenomics authored Nov 03, 2022
  
  eb30db9b
Sep 29, 2022
- Fix an issue of retaining chimeric fragment when the read lengths are different. · 60fbe5f7
  Li authored Sep 29, 2022
  
  60fbe5f7
Jul 27, 2022
- Implement a minimizer class and its generator. · 22f52653
  Haowen Zhang authored Jul 21, 2022
  22f52653

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Commits · b602fda20879c38ae43b2256027f9318de14c1fa