Commits · adba6823098c1170925825150f619c7fc7339cbd · github_fork / Chromap

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Nov 14, 2022
- Move funcs to index utils. · adba6823
  Swift Genomics authored Nov 12, 2022
  
  adba6823
- Use funcs instead of hardcoded bit ops. · 212145ea
  Swift Genomics authored Nov 12, 2022
  
  212145ea
- Add some comments. · 5f3094ca
  Swift Genomics authored Nov 06, 2022
  
  5f3094ca
- Rename hit.h to minimizer_utils.h. · a019286c
  Swift Genomics authored Nov 06, 2022
  
  a019286c
- Use encapsulated Minimizer funcs. · 6eb7b958
  Swift Genomics authored Nov 06, 2022
  
  6eb7b958
- Add funcs to compute index, position, strand for Minimizer. · 1c23c7e6
  Swift Genomics authored Nov 06, 2022
  
  1c23c7e6
- Fix the comment for loopup table hash func. · 95ddd275
  Swift Genomics authored Nov 05, 2022
  
  95ddd275
- Revise a func for candidate supplement. · 5cab2035
  Haowen Zhang authored Aug 18, 2022
  
  5cab2035
- Rename two funcs to supplement candidates. · 157e5b15
  Haowen Zhang authored Aug 17, 2022
  
  157e5b15
- Update function names. · e5377e79
  Haowen Zhang authored Aug 09, 2022
  
  e5377e79
- A config to pass candidate generating parameters. · e4d29aa9
  Haowen Zhang authored Aug 09, 2022
  
  e4d29aa9
- Rename some variables and remove unused variables. · bcb3bd05
  Haowen Zhang authored Aug 09, 2022
  
  bcb3bd05
- Rename seed hit lists. · 69e2b61f
  Haowen Zhang authored Aug 09, 2022
  
  69e2b61f
- Use functions to convert hits to positions. · a7bf985e
  Haowen Zhang authored Aug 09, 2022
  
  a7bf985e
- Rename a minimizer position as a hit. · 4ffcc6aa
  Haowen Zhang authored Aug 08, 2022
  
  4ffcc6aa
- A func to compute candidate position. · 2f4c02c9
  Haowen Zhang authored Aug 04, 2022
  
  2f4c02c9
- Use a func to perform hit heap merge. · c072a905
  Haowen Zhang authored Jul 27, 2022
  
  c072a905
- Remove code copy in index construction. · abab51fd
  Haowen Zhang authored Jul 26, 2022
  
  abab51fd
- Add more comment for khash in Index. · b7ca7e1f
  Haowen Zhang authored Jul 26, 2022
  
  b7ca7e1f
Nov 04, 2022
- Bump cache version in CI. · 25e218d6
  swiftgenomics authored Nov 03, 2022
  
  25e218d6
- Downgrade openmp version in CI. · 6864f7fa
  swiftgenomics authored Nov 03, 2022
  
  6864f7fa
- Update openmp version · eb30db9b
  swiftgenomics authored Nov 03, 2022
  
  eb30db9b
Jul 27, 2022
- Implement a minimizer class and its generator. · 22f52653
  Haowen Zhang authored Jul 21, 2022
  22f52653
- More encapsulation for mapping metadata. · fc69224c
  Haowen Zhang authored Jul 20, 2022
  
  fc69224c
- Remove debug code. · 774eee12
  Haowen Zhang authored Jul 19, 2022
  
  774eee12
- Rename func. · 33723c28
  Haowen Zhang authored Jul 19, 2022
  
  33723c28
- Removed unused class variables. · 2b8a6f03
  Haowen Zhang authored Jul 18, 2022
  
  2b8a6f03
- Introduce DraftMappingGenerator. · 51d51df0
  Haowen Zhang authored Jul 18, 2022
  
  51d51df0
- Rename funcs and variables for draft mappings. · 9d474b4f
  Haowen Zhang authored Jul 18, 2022
  
  9d474b4f
- Fix wrong conversion in DraftMapping. · a7fe07df
  Haowen Zhang authored Jul 18, 2022
  
  a7fe07df
- Fix a bug in candidate sorting. · ab5879fb
  Haowen Zhang authored Jul 18, 2022
  
  ab5879fb
- Introduce DraftMapping. · 505e2bac
  Haowen Zhang authored Jul 18, 2022
  
  505e2bac
- Refactor code. · f3be2b46
  Haowen Zhang authored Jul 18, 2022
  f3be2b46
- Reorder the funcs to match the declaration. · e26862e4
  Haowen Zhang authored Jul 18, 2022
  
  e26862e4
- Func to get candidate rid and position. · 818e4b44
  Haowen Zhang authored Jul 18, 2022
  
  818e4b44
- Refactor VerifyCandidates. · 05705cec
  Haowen Zhang authored Jul 18, 2022
  05705cec
- Func to validate candidate position range. · 411e025a
  Haowen Zhang authored Jul 18, 2022
  
  411e025a
- Func to get a mapping supported by all minimizers. · c5a8ca7e
  Haowen Zhang authored Jul 15, 2022
  
  c5a8ca7e
Jul 20, 2022
- Fix a bug for hashing 32 bp sequences. · 7f283b6f
  Haowen Zhang authored Jul 19, 2022
  
  7f283b6f
May 09, 2022
- Update the links of the badges. · e8851a40
  Haowen Zhang authored May 08, 2022
  
  e8851a40

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Commits · adba6823098c1170925825150f619c7fc7339cbd