Commits · 8891985c6b1717e0b5ed921a986177e3613bca56 · Chaos / chaos.juicer · GitLab

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Aug 09, 2019
- Adding options for ligation junction and setting scripts directory; fixing bug... · 8891985c
  nchernia authored Aug 08, 2019
  8891985c
- deleting separate LibraryComplexity class · beaa79e1
  nchernia authored Aug 08, 2019
  
  beaa79e1
- Got rid of LibraryComplexity class; moved statistics into things that happen with early exit · 74a70ed8
  nchernia authored Aug 08, 2019
  
  74a70ed8
- changing email address · 217a5e5f
  nchernia authored Aug 08, 2019
  
  217a5e5f
- adjusting the ordering of the stats jobs to be correct; eliminating the stats on the dups · 39ceb9f0
  nchernia authored Aug 08, 2019
  
  39ceb9f0
- We have merged LibraryComplexity into parent jar and now recommend exporting Java memory options · 2d89085b
  nchernia authored Aug 08, 2019
  
  2d89085b
- Merge branch 'master' of https://github.com/theaidenlab/juicer · 3bc6889c
  nchernia authored Aug 08, 2019
  
  3bc6889c
- Adding ligation junction option #122, adding scripts option #124. Making no... · a3a239a7
  nchernia authored Aug 08, 2019
  a3a239a7
- Some cleanup with Voltron-specific options; added back in the -l flag since... · cf8f91e5
  nchernia authored Aug 08, 2019
  cf8f91e5
- One should set memory before calling juicer_tools; e.g. via export... · da4bfd05
  nchernia authored Aug 08, 2019
  da4bfd05
Aug 02, 2019
- Update CONTRIBUTING.md · 097b6900
  Muhammad Saad Shamim authored Aug 01, 2019
  
  097b6900
- Update CODE_OF_CONDUCT.md · 503d0323
  nchernia authored Aug 01, 2019
  
  503d0323
- Update CONTRIBUTING.md · 7bba4c5a
  nchernia authored Aug 01, 2019
  
  7bba4c5a
- Create CONTRIBUTING.md · 93a262fc
  Muhammad Saad Shamim authored Aug 01, 2019
  
  93a262fc
- Update issue templates · 88796360
  Muhammad Saad Shamim authored Aug 01, 2019
  
  88796360
Aug 01, 2019
- Create CODE_OF_CONDUCT.md · c563d663
  nchernia authored Aug 01, 2019
  
  c563d663
Jun 06, 2019
- Merge pull request #117 from aidenlab/add_user · 59f69c2b
  nchernia authored Jun 05, 2019
  59f69c2b
- rollback · 17957c54
  nchernia authored Jun 05, 2019
  
  17957c54
- rollback encode changes in add user branch · 26f20f38
  nchernia authored Jun 05, 2019
  
  26f20f38
Jun 05, 2019
- Merged changes from master · 91dbb878
  nchernia authored Jun 04, 2019
  
  91dbb878
- adding ability to handle multiple ligation junctions · d696dd12
  nchernia authored Jun 04, 2019
  
  d696dd12
- Adding in flag for no wobble / just exact duplicates · 92de655d
  nchernia authored Jun 04, 2019
  
  92de655d
- Adding in options to mega script; updating memory requirements · 90e05b27
  nchernia authored Jun 04, 2019
  
  90e05b27
- minor update to mem request · 809943d3
  nchernia authored Jun 04, 2019
  
  809943d3
- Making scripts more consistent by having check for system for juicer_tools path · a52e1760
  nchernia authored Jun 04, 2019
  
  a52e1760
- Major changes: · b18e0fb7
  nchernia authored Jun 04, 2019
  b18e0fb7
- adding in capability of no wobble / just exact duplicates · f9e9bd88
  nchernia authored Jun 04, 2019
  
  f9e9bd88
- some systems do not have zcat. also grep now handles more complicated ligation patterns · 9e2b476c
  nchernia authored Jun 04, 2019
  
  9e2b476c
- chimeric script should ignore header lines in SAM files · 94e871e8
  nchernia authored Jun 04, 2019
  
  94e871e8
May 24, 2019
- adding user flag #106 · 8283baba
  nchernia authored May 23, 2019
  
  8283baba
May 22, 2019
- Merge pull request #112 from aidenlab/master · 44752230
  Muhammad Saad Shamim authored May 21, 2019
  44752230
Apr 26, 2019
- updating names to be consistent with new jar · 6be7c0f8
  Aiden Lab authored Apr 26, 2019
  
  6be7c0f8
- Merge branch 'encode' of https://github.com/aidenlab/juicer into encode · 53fe7de2
  Aiden Lab authored Apr 25, 2019
  
  53fe7de2
- fixed some small issues that might have resulted in script reporting nonexistent problem · e8b29eb9
  Aiden Lab authored Apr 25, 2019
  
  e8b29eb9
- fixed some small issues that might have resulted in script reporting non existent problem · 94ec6919
  Aiden Lab authored Apr 25, 2019
  
  94ec6919
Apr 19, 2019
- added ligation option · 08ba135b
  nchernia authored Apr 18, 2019
  
  08ba135b
- updated makemega addstats to go with latest stats; · 4f6480ac
  nchernia authored Apr 18, 2019
  
  4f6480ac
- handles multiple ligation junctions · d3039d46
  nchernia authored Apr 18, 2019
  
  d3039d46
Apr 06, 2019
- merging changes from master · 518c0a1f
  nchernia authored Apr 06, 2019
  
  518c0a1f
- CPU additions for justexact option, no fragment maps by default, changes to... · 284cb332
  nchernia authored Apr 06, 2019
  284cb332

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