Commit 94e871e8 authored by nchernia's avatar nchernia
Browse files

chimeric script should ignore header lines in SAM files

parent 6be7c0f8

SLURM/scripts/chimeric_blacklist.awk

+1 −1
Changes for SLURM/scripts/chimeric_blacklist.awk: 1 added line, 1 removed line.
Original line number Diff line number Diff line
@@ -74,7 +74,7 @@ BEGIN{ 
  OFS="\t";

  tottot = -1; # will count first non-group

}

{

$0 !~ /^@/{

  # input file is sorted by read name.  Look at read name to group 

  # appropriately

  split($1,a,"/");

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