Commits · 53fe7de26133f872372fd29190312ea534dfc9c9 · Chaos / chaos.juicer · GitLab

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Apr 26, 2019
- Merge branch 'encode' of https://github.com/aidenlab/juicer into encode · 53fe7de2
  Aiden Lab authored Apr 25, 2019
  
  53fe7de2
- fixed some small issues that might have resulted in script reporting nonexistent problem · e8b29eb9
  Aiden Lab authored Apr 25, 2019
  
  e8b29eb9
Apr 19, 2019
- added ligation option · 08ba135b
  nchernia authored Apr 18, 2019
  
  08ba135b
- updated makemega addstats to go with latest stats; · 4f6480ac
  nchernia authored Apr 18, 2019
  
  4f6480ac
- handles multiple ligation junctions · d3039d46
  nchernia authored Apr 18, 2019
  
  d3039d46
Apr 06, 2019
- merging changes from master · 518c0a1f
  nchernia authored Apr 06, 2019
  
  518c0a1f
- CPU additions for justexact option, no fragment maps by default, changes to... · 284cb332
  nchernia authored Apr 06, 2019
  284cb332
Feb 26, 2019
- updating to modern version of mega.sh; adding the sum awk script for mega · 2ea1ae1f
  nchernia authored Feb 25, 2019
  
  2ea1ae1f
- adding in addstats script for mega · 957de090
  nchernia authored Feb 25, 2019
  
  957de090
Feb 25, 2019
- Merge pull request #97 from sidiropoulos/PBS_fix · 00bb6c24
  nchernia authored Feb 25, 2019
  00bb6c24
- Merge branch 'master' of https://github.com/aidenlab/juicer into PBS_fix · 968032d4
  Nikos Sidiropoulos authored Feb 25, 2019
  
  968032d4
- Account for gzipped fastq files · ba6d69d8
  Nikos Sidiropoulos authored Feb 25, 2019
  
  ba6d69d8
- Tidy code · 1cc6c95a
  Nikos Sidiropoulos authored Feb 25, 2019
  
  1cc6c95a
- Tidy code · 4851e365
  Nikos Sidiropoulos authored Feb 25, 2019
  
  4851e365
- Make executable · da5002cf
  Nikos Sidiropoulos authored Feb 25, 2019
  
  da5002cf
- Add juicer_tools script · cebaffcd
  Nikos Sidiropoulos authored Feb 25, 2019
  
  cebaffcd
- Indent lines after if-else statements · 6b6a0748
  Nikos Sidiropoulos authored Feb 25, 2019
  
  6b6a0748
- Set delimiter to nothing when pasting fastq files · 06475c3c
  Nikos Sidiropoulos authored Feb 25, 2019
  
  06475c3c
- Make executable · 2817f1a6
  Nikos Sidiropoulos authored Feb 25, 2019
  
  2817f1a6
Feb 02, 2019
- Merge pull request #96 from Zojka/Zojka-patch-1 · 43cc35ff
  nchernia authored Feb 01, 2019
  43cc35ff
- Moved Library Complexity into jar · 23f80dd0
  nchernia authored Feb 01, 2019
  
  23f80dd0
Jan 30, 2019
- multithreading for "bwa aln" · 7b8a26b1
  Zojka authored Jan 30, 2019
  7b8a26b1
Jan 08, 2019
- Merge pull request #92 from jemilianosf/patch-1 · 84f6957a
  nchernia authored Jan 07, 2019
  84f6957a
- Update calculate_map_resolution.sh · 124cbd56
  jemilianosf authored Jan 07, 2019
  124cbd56
Aug 05, 2018
- Update README.md · 50e7591c
  Muhammad Saad Shamim authored Aug 04, 2018
  
  50e7591c
May 18, 2018
- change to call alignonly without chrom.sizes; merging moved to appropriate... · f44753e7
  nchernia authored May 17, 2018
  f44753e7
May 14, 2018
- comment out unecessary · 590d7d0e
  nchernia authored May 14, 2018
  
  590d7d0e
- adding back in done split dir · df1b25f4
  nchernia authored May 14, 2018
  
  df1b25f4
May 04, 2018
- Merge pull request #61 from SooLee/patch-1 · 9c55ecb1
  nchernia authored May 03, 2018
  9c55ecb1
- Update generate_site_positions.py · 95c361de
  Soo Lee authored May 03, 2018
  
  95c361de
Apr 07, 2018
- updating CPU version of mega to the more modern version · 1ef023d1
  nchernia authored Apr 06, 2018
  
  1ef023d1
Apr 06, 2018
- Mainly changing calls to qsub for new required flag l_hrt · 2b8a2a33
  nchernia authored Apr 06, 2018
  
  2b8a2a33
- Small updates to mega with exit codes; updating chmod modes of files · 09f63c40
  nchernia authored Apr 06, 2018
  
  09f63c40
- Adding stages and some other checks to the mega script · 6999168b
  nchernia authored Apr 06, 2018
  
  6999168b
- Bug fixes: postproc stage bug and count ligations finishing quickly · 6ec734a0
  nchernia authored Apr 06, 2018
  
  6ec734a0
- Bug fix for postproc stage; bug fix for when count ligations takes longer than alignment · 5b5bd5ef
  nchernia authored Apr 06, 2018
  
  5b5bd5ef
Mar 21, 2018
- Merge pull request #54 from macroscian/patch-1 · d48dd4b6
  nchernia authored Mar 21, 2018
  d48dd4b6
- Escape errorfile, in case it has dots in it · 82515536
  macroscian authored Mar 21, 2018
  82515536
Jan 26, 2018
- updating to include option for flags -1 and -2 to read in files from command... · 1da25fb7
  nchernia authored Jan 25, 2018
  1da25fb7
Dec 01, 2017
- Fixed HIC_tmp hardcoding · d3ee11b5
  nchernia authored Nov 30, 2017
  
  d3ee11b5

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