Commits · 05c4e40e711879fc5054659ba9e59052f7d8c527 · Chaos / chaos.juicer

Browse files

Apr 29, 2022
- update hic_tools to 3.7.4 · 05c4e40e
  Chaos authored Apr 29, 2022
  
  05c4e40e
- update hic_tools to 3.7.4 · fc2e950e
  Chaos authored Apr 29, 2022
  
  fc2e950e
- change juicer_tools with hic_tools_3.7.4 · a84c785b
  Chaos authored Apr 29, 2022
  
  a84c785b
Apr 28, 2022
- set to the default normalization for pre · 2dbf33ae
  Chaos authored Apr 28, 2022
  
  2dbf33ae
Apr 27, 2022
- remove -r parameter in samtools · 52fbb2c7
  Chaos authored Apr 27, 2022
  
  52fbb2c7
Apr 24, 2022
- code clean · 44a5f4fd
  Chaos authored Apr 24, 2022
  
  44a5f4fd
- remove -r in juicer_tools pre · 45294dc8
  Chaos authored Apr 24, 2022
  
  45294dc8
- fix a bug in awk_cmd · 6ddf0ba3
  Chaos authored Apr 24, 2022
  
  6ddf0ba3
- change the process when statistical files already been made · 090db54a
  Chaos authored Apr 24, 2022
  
  090db54a
- change the position of default software · 96bed337
  Chaos authored Apr 24, 2022
  
  96bed337
- change default work dir · 82c37497
  Chaos authored Apr 24, 2022
  
  82c37497
- change juicer_dir · 95c3ab1e
  Chaos authored Apr 24, 2022
  
  95c3ab1e
Apr 22, 2022
- rename juicer_tools_2.14.0.jar to feature_tools.jar · 98af01d3
  Chaos authored Apr 22, 2022
  
  98af01d3
Apr 21, 2022
- update README · 838d93cd
  Chaos authored Apr 21, 2022
  
  838d93cd
- change the version of juicer_tools · d9433cf2
  Chaos authored Apr 21, 2022
  
  d9433cf2
- change the version of juicer_tools · 0e8d4192
  Chaos authored Apr 21, 2022
  
  0e8d4192
- change README file · 91789fe5
  Chaos authored Apr 21, 2022
  
  91789fe5
- Update README.md · fd45143d
  chaosfang404 authored Apr 21, 2022
  
  fd45143d
- upload the modified pipeline · b024ab8c
  Chaos authored Apr 21, 2022
  
  b024ab8c
Jan 27, 2022
- Resolved #262 · c88f0893
  Muhammad S Shamim authored Jan 27, 2022
  
  c88f0893
Jan 24, 2022
- encode link · a89938e5
  Muhammad S Shamim authored Jan 23, 2022
  
  a89938e5
- Merge pull request #257 from aidenlab/fix-encode-mega-stats · 827fe444
  Muhammad Saad Shamim authored Jan 23, 2022
  827fe444
- fix path · 5e822868
  Muhammad S Shamim authored Jan 23, 2022
  
  5e822868
- Merge pull request #256 from aidenlab/encode · b706453b
  Muhammad Saad Shamim authored Jan 23, 2022
  b706453b
- Update README.md · b0d1bb78
  Muhammad S Shamim authored Jan 23, 2022
  
  b0d1bb78
- Update README.md · 3041438b
  Muhammad S Shamim authored Jan 23, 2022
  
  3041438b
Jan 20, 2022
- Merge pull request #254 from aidenlab/master · 2bb48d64
  Muhammad Saad Shamim authored Jan 20, 2022
  2bb48d64
- Merge branch 'encode' into master · f41ded0c
  Muhammad Saad Shamim authored Jan 20, 2022
  
  f41ded0c
Jan 12, 2022
- calculating stats from inter txt and m files · dbd51179
  Muhammad S Shamim authored Jan 11, 2022
  
  dbd51179
Jan 11, 2022
- Rename mega_from_bams_od.sh to mega_from_bams_diploid.sh · 4ff5fc44
  Muhammad Saad Shamim authored Jan 10, 2022
  
  4ff5fc44
- Merge pull request #251 from dudcha/encode-mega · 8a8ed5f1
  Muhammad Saad Shamim authored Jan 10, 2022
  8a8ed5f1
- add raw and control accessibility · ca33ac47
  dudcha authored Jan 10, 2022
  
  ca33ac47
- add mapq30 haploid accessibility · cd73fad4
  dudcha authored Jan 10, 2022
  
  cd73fad4
Jan 10, 2022
- running-end-to-end · 246a5858
  dudcha authored Jan 10, 2022
  
  246a5858
- up and including dhs step · 65537d79
  dudcha authored Jan 10, 2022
  
  65537d79
- Efficient bam-to-mnd · 22b47a86
  dudcha authored Jan 10, 2022
  
  22b47a86
- mostly basic debugging · d9c19d50
  dudcha authored Jan 09, 2022
  
  d9c19d50
Jan 09, 2022
- end-to-end first iteration · c49fa2a6
  dudcha authored Jan 09, 2022
  
  c49fa2a6
- simplified mega script first partial commit · f45ac064
  dudcha authored Jan 09, 2022
  
  f45ac064
- simplified mega script · 2fd378f3
  dudcha authored Jan 08, 2022
  
  2fd378f3

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Commits · 05c4e40e711879fc5054659ba9e59052f7d8c527