fix path

	ret=$(samtools view $sthreadstring -f 1024 -F 256 $outputdir/merged_dedup.bam | awk '{if ($0~/rt:A:7/){singdup++}else{dup++}}END{print dup,singdup}')

	dups=$(echo $ret | awk '{print $1}')

	singdups=$(echo $ret | awk '{print $2}')

	cat $splitdir/*.res.txt | awk -v dups=$dups -v singdups=$singdups -v ligation=$ligation -v singleend=1 -f ${juiceDir}/scripts/stats_sub.awk >> $outputdir/inter.txt

	cat $splitdir/*.res.txt | awk -v dups=$dups -v singdups=$singdups -v ligation=$ligation -v singleend=1 -f ${juiceDir}/scripts/common/stats_sub.awk >> $outputdir/inter.txt

    else

	dups=$(samtools view -c -f 1089 -F 256 $sthreadstring $outputdir/merged_dedup.bam)

	cat $splitdir/*.res.txt | awk -v dups=$dups -v ligation=$ligation -f ${juiceDir}/scripts/stats_sub.awk >> $outputdir/inter.txt

	cat $splitdir/*.res.txt | awk -v dups=$dups -v ligation=$ligation -f ${juiceDir}/scripts/common/stats_sub.awk >> $outputdir/inter.txt

    fi

    cp $outputdir/inter.txt $outputdir/inter_30.txt