Commits · 58bf65409d4744dbc33d39fbb50bbb529a787cfd · github_fork / ZUMIs

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Dec 26, 2018
- try fix again' · 58bf6540
  Christoph Ziegenhain authored Dec 25, 2018
  
  58bf6540
Dec 25, 2018
- make UMI collapse more robust · a2b7b3c2
  Christoph Ziegenhain authored Dec 25, 2018
  
  a2b7b3c2
Oct 21, 2018
- corrected typos · 6b9ef190
  Swati Parekh authored Oct 21, 2018
  
  6b9ef190
- corrected some typos · c83e67fc
  Swati Parekh authored Oct 21, 2018
  
  c83e67fc
Oct 15, 2018
- Update README.md · 53d2b8bc
  Swati Parekh authored Oct 15, 2018
  
  53d2b8bc
- initialized isPass · 68b26bf5
  Swati Parekh authored Oct 14, 2018
  
  68b26bf5
- fix readme formatting · 12cf08a6
  Christoph Ziegenhain authored Oct 14, 2018
  
  View commits for tag zUMIs2.2 zUMIs2.2
  
  12cf08a6
- version 2.2.0: frameshift correction and other improvements · c8aaedaf
  Christoph Ziegenhain authored Oct 14, 2018
  
  c8aaedaf
- version 2.2.0: frameshift correction and other improvements · 40752559
  Christoph Ziegenhain authored Oct 14, 2018
  
  40752559
Oct 09, 2018
- Update README.md · 9507171b
  Swati Parekh authored Oct 09, 2018
  
  9507171b
Oct 05, 2018
- improve clean-up of temporary files · edf1951f
  Christoph Ziegenhain authored Oct 05, 2018
  
  edf1951f
- remove bam merging to further speed up filtering · 47173731
  Christoph Ziegenhain authored Oct 04, 2018
  
  47173731
Sep 27, 2018
- speed up UMI hamming distance filter · bdbaac07
  Christoph Ziegenhain authored Sep 27, 2018
  
  bdbaac07
Sep 14, 2018
- fix if pattern detection not in read1 · 2619c460
  Christoph Ziegenhain authored Sep 14, 2018
  
  2619c460
Aug 27, 2018
- speed up sorting of bam files after featureCounts · 529d5a09
  Christoph Ziegenhain authored Aug 27, 2018
  
  529d5a09
Aug 22, 2018
- remove debugging verbose · f0425864
  Christoph Ziegenhain authored Aug 22, 2018
  
  f0425864
- fix all types of read IDs · c711a949
  Christoph Ziegenhain authored Aug 22, 2018
  
  c711a949
Aug 21, 2018
- compatibility with variable cDNA length & odd read IDs · 383e1728
  Christoph Ziegenhain authored Aug 21, 2018
  
  383e1728
- compatibility with variable cDNA length & odd read IDs · 53fd4d48
  Christoph Ziegenhain authored Aug 21, 2018
  
  53fd4d48
- Minor bug fixes · 63166ec5
  Christoph Ziegenhain authored Aug 21, 2018
  
  63166ec5
Aug 10, 2018
- update readme again · 6f40c014
  Christoph Ziegenhain authored Aug 09, 2018
  
  6f40c014
- update readme · be812572
  Christoph Ziegenhain authored Aug 09, 2018
  
  View commits for tag zUMIs2.0 zUMIs2.0
  
  be812572
- version checking · 9847d6b6
  Christoph Ziegenhain authored Aug 09, 2018
  
  9847d6b6
- Release of zUMIs2.0 · 090a62c7
  Christoph Ziegenhain authored Aug 09, 2018
  
  090a62c7
Aug 06, 2018
- search for fastq files in output folder when using -w · b5d08f88
  Christoph Ziegenhain authored Aug 06, 2018
  
  b5d08f88
- search for fastq files in output folder when using -w · be85eb90
  Christoph Ziegenhain authored Aug 06, 2018
  
  be85eb90
Jul 13, 2018
- update InDrops usage · 2b1c0bae
  cziegenhain authored Jul 13, 2018
  
  2b1c0bae
Jul 11, 2018
- fixed a bug in InDrops Mode · 2c3209f7
  sdparekh authored Jul 11, 2018
  
  2c3209f7
Jul 05, 2018
- fixed a bug in indrops mode · fe318735
  sdparekh authored Jul 05, 2018
  
  fe318735
Jun 23, 2018
- fixed the readid bug in fqfilter-indropsÂ · 5f7e2ae1
  Swati Parekh authored Jun 23, 2018
  
  5f7e2ae1
- README Was changed · e3846938
  Swati Parekh authored Jun 23, 2018
  e3846938
- fixed a readid bug in inDrops fqfilter · 139e5778
  Swati Parekh authored Jun 23, 2018
  
  139e5778
Jun 05, 2018
- Update README.md · 22a03154
  Swati Parekh authored Jun 05, 2018
  
  22a03154
- fix compatibility with Rsubread 1.30.x · d952b52e
  ziegenhain@bio.lmu.de authored Jun 05, 2018
  
  d952b52e
May 04, 2018
- smaller fixes incl nReadsBC and better RAM usage estimation · 8abb86ba
  ziegenhain@bio.lmu.de authored May 03, 2018
  
  8abb86ba
Apr 22, 2018
- Convert relative to absolute paths · 3ef7abb1
  ziegenhain@bio.lmu.de authored Apr 22, 2018
  
  3ef7abb1
Apr 14, 2018
- modify README · 8f19f830
  ziegenhain@bio.lmu.de authored Apr 13, 2018
  
  8f19f830
Apr 13, 2018
- combinatorial indexing · 0dd73087
  ziegenhain@bio.lmu.de authored Apr 12, 2018
  
  View commits for tag zUMIs.0.0.6 zUMIs.0.0.6
  
  0dd73087
Apr 05, 2018
- fix possible integer overflow · 7d3e71a4
  ziegenhain@bio.lmu.de authored Apr 04, 2018
  
  7d3e71a4
Mar 30, 2018
- update readme 0.0.5 · 5e5500f9
  ziegenhain@bio.lmu.de authored Mar 30, 2018
  
  View commits for tag zUMIs.0.0.5 zUMIs.0.0.5
  
  5e5500f9

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Commits · 58bf65409d4744dbc33d39fbb50bbb529a787cfd