Commit 7d3e71a4 authored by ziegenhain@bio.lmu.de's avatar ziegenhain@bio.lmu.de
Browse files

fix possible integer overflow

parent 5e5500f9

zUMIs-dge.R

+1 −1
Original line number Diff line number Diff line
@@ -313,7 +313,7 @@ makeGEprofile <- function(abamfile,ubamfile,bcfile,safannot,ncores,stra,bcstart, 
  ## XC binning below

  if(XCbin != 0){

    XC_obs<-unique(reads$XC)

    if(length(XC_obs)*length(bc$V1)> 1e+10){

    if(as.numeric(length(XC_obs))*as.numeric(length(bc$V1)) > 1e+10){

      print("There are too many noisy barcodes, binning will be skipped")

    }else{

      print(paste("I am binning cell barcodes within hamming distance ",XCbin,sep=""))

zUMIs-master.sh

+1 −1
Original line number Diff line number Diff line
@@ -3,7 +3,7 @@ 
# Pipeline to run UMI-seq analysis from fastq to read count tables.

# Authors: Swati Parekh &  Christoph Ziegenhain

# Contact: parekh@bio.lmu.de or christoph.ziegenhain@ki.se or hellmann@bio.lmu.de

vers=0.0.5

vers=0.0.5b

function check_opts() {

    value=$1

    name=$2

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