Commits · 861b55147a13034dca056286be250851d058369b · github_fork / Presto 20250701

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Nov 09, 2022
- re-add caching step · 861b5514
  AustinHartman authored Nov 08, 2022
  
  861b5514
- Merge pull request #1 from AustinHartman/debug-action · b1af2d37
  Austin Hartman authored Nov 08, 2022
  b1af2d37
Nov 08, 2022
- test ubuntu 20.04 · c5dc7d06
  AustinHartman authored Nov 07, 2022
  
  c5dc7d06
- remove windows caching · 4b3304f8
  AustinHartman authored Nov 07, 2022
  
  4b3304f8
- rerun action · 7459b346
  AustinHartman authored Nov 07, 2022
  
  7459b346
Nov 05, 2022
- requireNamespace seurat; drop checks for R v3.6 · 19d55b9b
  AustinHartman authored Nov 04, 2022
  
  19d55b9b
- update linux action · 7ef06ba3
  AustinHartman authored Nov 04, 2022
  
  7ef06ba3
- update ubuntu version · 3bd615d7
  AustinHartman authored Nov 04, 2022
  
  3bd615d7
Nov 04, 2022
- drop unused dependency; remove Matrix version constraint · 35a51f9f
  AustinHartman authored Nov 03, 2022
  
  35a51f9f
- update r checks action · 19025003
  AustinHartman authored Nov 03, 2022
  
  19025003
Nov 03, 2022
- cran prep · 02d7ef2c
  AustinHartman authored Nov 02, 2022
  
  02d7ef2c
Jul 18, 2020
- add github actions for testing · 052085db
  Kamil Slowikowski authored Jul 17, 2020
  
  052085db
- Merge pull request #4 from innesbre/patch-1 · e7c9c6b7
  Kamil Slowikowski authored Jul 17, 2020
  e7c9c6b7
Mar 29, 2020
- Add biocViews to description · 0c957f6f
  Brendan Innes authored Mar 28, 2020
  0c957f6f
Feb 25, 2020
- allow sum and mean collapsing · 7f63f960
  Ilya Korsunsky authored Feb 24, 2020
  
  7f63f960
Nov 19, 2019
- added params to within · 3e31a977
  Ilya Korsunsky authored Nov 18, 2019
  
  3e31a977
Nov 17, 2019
- within analysis · 0f167bff
  Ilya Korsunsky authored Nov 16, 2019
  
  0f167bff
- added options to do DGE within clusters · 156062bc
  Ilya Korsunsky authored Nov 16, 2019
  
  156062bc
Nov 16, 2019
- filter genes locally in the pairwise analysis · b5a71b4f
  Ilya Korsunsky authored Nov 15, 2019
  
  b5a71b4f
- filter genes locally in the pairwise analysis · de9b094a
  Ilya Korsunsky authored Nov 15, 2019
  
  de9b094a
Nov 15, 2019
- added keep_n option to collapse counts · dfde6966
  Ilya Korsunsky authored Nov 14, 2019
  
  dfde6966
Nov 13, 2019
- fixed code in pseudobulk.R · 09036560
  Ilya Korsunsky authored Nov 13, 2019
  
  09036560
Nov 09, 2019
- added min_cells_per_group to collapse counts function · 303ea288
  Ilya Korsunsky authored Nov 08, 2019
  
  303ea288
- added functions to do pairwise group comparisons · ad54ceab
  Ilya Korsunsky authored Nov 08, 2019
  
  ad54ceab
- pseudobulk notebook · 75a11045
  Ilya Korsunsky authored Nov 08, 2019
  
  75a11045
Nov 07, 2019
- Update pseudobulk.R · 0aa8def4
  ilyakorsunsky authored Nov 06, 2019
  0aa8def4
- Update pseudobulk.R · d7c0ddf1
  ilyakorsunsky authored Nov 06, 2019
  d7c0ddf1
Oct 17, 2019
- removed print statement · f9fe79d9
  Ilya Korsunsky authored Oct 17, 2019
  
  f9fe79d9
- fixed background collapsing · cf92cadf
  Ilya Korsunsky authored Oct 17, 2019
  
  cf92cadf
- collapse_counts bug fix · 2fa61cd5
  Ilya Korsunsky authored Oct 17, 2019
  
  2fa61cd5
- specified Matrix version of rowSums · 9a76f060
  Ilya Korsunsky authored Oct 16, 2019
  
  9a76f060
Oct 16, 2019
- forget to cast as factor in compute_hash · de0c2af7
  Ilya Korsunsky authored Oct 15, 2019
  
  de0c2af7
- more a more stable hash function · ae239018
  Ilya Korsunsky authored Oct 15, 2019
  
  ae239018
Oct 15, 2019
- Updated cluster_ to cluster · 64fca625
  ilyakorsunsky authored Oct 14, 2019
  
  64fca625
- Merge pull request #3 from immunogenomics/pseudobulk · 7d6c7fc6
  ilyakorsunsky authored Oct 14, 2019
  7d6c7fc6
- pseudobulk with DESeq2 methods · 56fd7d07
  Ilya Korsunsky authored Oct 14, 2019
  
  56fd7d07
Oct 14, 2019
- do not track htmls · c2830519
  Ilya Korsunsky authored Oct 14, 2019
  
  c2830519
May 29, 2019
- nothing · 4b96fc86
  Ilya Korsunsky authored May 28, 2019
  
  4b96fc86
- removed inst/doc from ignore to allow vignettes · 90af1d00
  Ilya Korsunsky authored May 28, 2019
  
  90af1d00
- changed to lowercase presto · 51eefa74
  Ilya Korsunsky authored May 28, 2019
  
  51eefa74

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Commits · 861b55147a13034dca056286be250851d058369b