Merge pull request #1 from AustinHartman/debug-action (b1af2d37) · Commits · github_fork / Presto 20250701

.github/workflows/R-CMD-check.yaml

+5 −21

Original line number	Diff line number	Diff line
		@@ -18,12 +18,11 @@ jobs:
		fail-fast: false
		matrix:
		config:
		- {os: windows-latest, r: '4.0'}
		- {os: macOS-latest, r: '3.6'}
		- {os: macOS-latest, r: '4.0'}
		- {os: windows-latest, r: '4.1'}
		- {os: macOS-latest, r: '4.1'}
		- {os: macOS-latest, r: 'devel'}
		- {os: ubuntu-16.04, r: '3.6', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
		- {os: ubuntu-16.04, r: '4.0', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
		- {os: ubuntu-22.04, r: '4.1'}
		- {os: ubuntu-20.04, r: '4.1'}

		env:
		R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
		@@ -36,6 +35,7 @@ jobs:
		- uses: r-lib/actions/setup-r@v2.3.0
		with:
		r-version: ${{ matrix.config.r }}
		use-public-rspm: true

		- uses: r-lib/actions/setup-pandoc@v2.3.0

		@@ -45,22 +45,6 @@ jobs:
		saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
		shell: Rscript {0}

		- name: Cache R packages
		if: runner.os != 'Windows'
		uses: actions/cache@v1
		with:
		path: ${{ env.R_LIBS_USER }}
		key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
		restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-

		- name: Install system dependencies
		if: runner.os == 'Linux'
		env:
		RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
		run: \|
		Rscript -e "remotes::install_github('r-hub/sysreqs')"
		sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
		sudo -s eval "$sysreqs"
		- name: Install dependencies
		run: \|
		remotes::install_deps(dependencies = TRUE)

+1 −2

Original line number	Diff line number	Diff line
		@@ -13,7 +13,6 @@ globalVariables(
		#' @param vars_use vector of column names to use when computing the hash
		#'
		#' @export
		#'
		compute_hash <- function(data_df, vars_use) {
		base <- 1
		hash <- rep(0, nrow(data_df))

+1 −0

Original line number	Diff line number	Diff line
		@@ -89,6 +89,7 @@ wilcoxauc.Seurat <- function(
		seurat_assay = "RNA",
		...
		) {
		requireNamespace("Seurat")
		X_matrix <- Seurat::GetAssayData(X, assay = seurat_assay, slot = assay)
		if (is.null(group_by)) {
		y <- Seurat::Idents(X)