Commits · b45792e66856778b126e89450dc91f53991770ee · github_fork / Chromap

Browse files

Mar 03, 2021
- Use errors and mapping length to compute score · b45792e6
  Haowen Zhang authored Mar 02, 2021
  
  b45792e6
Mar 02, 2021
- Remove some unused code · 49eaa8aa
  Haowen Zhang authored Mar 01, 2021
  
  49eaa8aa
Feb 23, 2021
- Fix some bugs and there are still bugs · 436a62b6
  Haowen Zhang authored Feb 23, 2021
  
  436a62b6
- Fix bugs in split mapping, it now works · 4230e9f0
  Haowen Zhang authored Feb 22, 2021
  
  4230e9f0
- Fix bugs in split mapping · 077f0fb8
  Haowen Zhang authored Feb 22, 2021
  
  077f0fb8
- Fix some bugs but there are still bugs · 805e2a5b
  Haowen Zhang authored Feb 22, 2021
  
  805e2a5b
Feb 17, 2021
- Fix bugs and generate correct cigar · ce518066
  Haowen Zhang authored Feb 16, 2021
  
  ce518066
Feb 16, 2021
- Output SAM for split mapping debug · a08d6ef0
  Haowen Zhang authored Feb 15, 2021
  
  a08d6ef0
- Experimental split mapping method · 1afb03ac
  Haowen Zhang authored Feb 15, 2021
  
  1afb03ac
Feb 09, 2021
- Fix some wrong mapping positions · a1cef38d
  Haowen Zhang authored Feb 09, 2021
  
  a1cef38d
- Merge remote-tracking branch 'origin/li_dev' into haowen_dev · 87baa9d3
  Haowen Zhang authored Feb 08, 2021
  87baa9d3
Feb 08, 2021
- Fix a bug of not using proper direction reads. Try to use bandedtraceback... · de6adbf7
  Li authored Feb 08, 2021
  de6adbf7
Feb 06, 2021
- Fix an issue of assigning wrong second_min_error. Allow gap beginning in more... · 80cf4370
  Li authored Feb 05, 2021
  80cf4370
Feb 05, 2021
- Merge branch 'li_dev' into haowen_dev · a99e6272
  Haowen Zhang authored Feb 04, 2021
  a99e6272
- Reformat code · 60efd798
  Haowen Zhang authored Feb 04, 2021
  
  60efd798
Feb 04, 2021
- Fix a bug of misplacing two lines · 34a6ec8d
  Li authored Feb 04, 2021
  
  34a6ec8d
Feb 02, 2021
- Do not use mapq_pe when split alignment · e5c6c213
  Li authored Feb 01, 2021
  
  e5c6c213
Feb 01, 2021
- Fix a bug of adjusting read end for pairs format · 075caeb8
  Li authored Jan 31, 2021
  
  075caeb8
Jan 31, 2021
- Support the F1F2,R1R2 case for split alignment. Fix several bugs regarding... · 690d97d0
  Li authored Jan 30, 2021
  690d97d0
Jan 28, 2021
- Use ksw for pairs format mapping · 8f3f1fc2
  Li authored Jan 28, 2021
  
  8f3f1fc2
- Add the format pairs for hic data analysis · e4645bae
  Li authored Jan 28, 2021
  
  e4645bae
Jan 26, 2021
- Support paired-end mode for SAM format. Fix several potential bugs. · 63e039ce
  Li authored Jan 26, 2021
  
  63e039ce
- Fix a possible bug of using out range reference sequence · 4024369b
  Li authored Jan 25, 2021
  
  4024369b
- Prepare to add the support for paired-end split alignment · 2fe280ee
  Li authored Jan 25, 2021
  
  2fe280ee
Jan 25, 2021
- Fix a bug of using wrong map_end_position · 826c238d
  Li authored Jan 25, 2021
  
  826c238d
- Support the split alignment starting with gap · 50e87713
  Li authored Jan 24, 2021
  
  50e87713
- Merge branch 'li_dev' of https://github.com/haowenz/chromap into li_dev · 93366593
  Li authored Jan 24, 2021
  
  93366593
Jan 24, 2021
- Merge branch 'li_dev' of https://github.com/haowenz/chromap into li_dev · d1e8d108
  Li authored Jan 24, 2021
  
  d1e8d108
- Fix cigar and position bugs · d5836636
  Haowen Zhang authored Jan 17, 2021
  
  d5836636
- Add MD tag for debug · b7354d2a
  Haowen Zhang authored Jan 17, 2021
  
  b7354d2a
- Fix some bugs for split alignments and get ready for a big change · 30026dfb
  Haowen Zhang authored Jan 16, 2021
  
  30026dfb
- Fix bugs in generating SAM · 1c5ab2a1
  Haowen Zhang authored Jan 14, 2021
  
  1c5ab2a1
- A painful implementation of split alignment with ed · d552d9ab
  Haowen Zhang authored Jan 12, 2021
  
  d552d9ab
- Generate SAM with ksw for single end read mapping · 053df9bb
  Haowen Zhang authored Jan 11, 2021
  
  053df9bb
- Formatting debug output · 68db07b4
  Haowen Zhang authored Dec 15, 2020
  
  68db07b4
Jan 18, 2021
- Add SAM header · f85025ae
  Haowen Zhang authored Jan 18, 2021
  
  f85025ae
- Fix cigar and position bugs · c3f8e555
  Haowen Zhang authored Jan 17, 2021
  
  c3f8e555
- Add MD tag for debug · 9858315d
  Haowen Zhang authored Jan 17, 2021
  
  9858315d
Jan 17, 2021
- Fix some bugs for split alignments and get ready for a big change · b62de826
  Haowen Zhang authored Jan 16, 2021
  
  b62de826
Jan 15, 2021
- Fix bugs in generating SAM · 4ad9bf79
  Haowen Zhang authored Jan 14, 2021
  
  4ad9bf79

Admin message

Commits · b45792e66856778b126e89450dc91f53991770ee