Commit ce518066 authored by Haowen Zhang's avatar Haowen Zhang
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Fix bugs and generate correct cigar

parent a08d6ef0
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+97 −70

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Original line number Diff line number Diff line
@@ -238,6 +238,7 @@ class Chromap {
  int multi_mapping_allocation_seed_;
  int drop_repetitive_reads_; // Read with more than this number of mappings will be dropped.
  int max_mapping_start_position_on_read5_ = 20; // inclusive
  int error_weight_ = 5;
  bool trim_adapters_;
  bool remove_pcr_duplicates_;
  bool is_bulk_data_;