Commits · 8dfd28a6765a16f55bd75847152bb796a06f8f19 · github_fork / Chromap

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Sep 07, 2021
- Update the version. · 8dfd28a6
  Haowen Zhang authored Sep 06, 2021
  
  8dfd28a6
- Merge branch 'refactor' · 567fc3ed
  Haowen Zhang authored Sep 06, 2021
  567fc3ed
- Merge pull request #28 from haowenz/li_dev2 · 860b7044
  Haowen Zhang authored Sep 06, 2021
  860b7044
- Clean up the code · 0293ab53
  Li authored Sep 06, 2021
  
  0293ab53
Sep 06, 2021
- Fix a bug causing cache store empty entries. · 077b2e50
  Li authored Sep 05, 2021
  
  077b2e50
Sep 05, 2021
- Improve cache efficiency · 7d41b617
  Li authored Sep 04, 2021
  
  7d41b617
Aug 22, 2021
- Update .travis.yml · f1cf768b
  Haowen Zhang authored Aug 22, 2021
  
  f1cf768b
- Update .travis.yml · 723a6d5f
  Haowen Zhang authored Aug 22, 2021
  
  723a6d5f
- Keep one OutputTools class. · 42a1dbb4
  Haowen Zhang authored Aug 21, 2021
  
  42a1dbb4
- Remove an unused function. · 4316fba0
  Haowen Zhang authored Aug 21, 2021
  
  4316fba0
Aug 21, 2021
- Use enum for mapping output formats. · b51d39fb
  Haowen Zhang authored Aug 21, 2021
  
  b51d39fb
- Use struct to hold index parameters. · 46072416
  Haowen Zhang authored Aug 21, 2021
  
  46072416
- Use struct to hold mapping parameters. · 8256b385
  Haowen Zhang authored Aug 21, 2021
  
  8256b385
- Format the code. · 8efd2283
  Haowen Zhang authored Aug 21, 2021
  
  8efd2283
- Merge pull request #26 from haowenz/custom_read_format · 0e5159f8
  Haowen Zhang authored Aug 20, 2021
  0e5159f8
- Move read format parser to a function. · 817266a2
  Li authored Aug 20, 2021
  
  817266a2
- Merge pull request #25 from haowenz/custom_read_format · 1daabe5c
  Haowen Zhang authored Aug 20, 2021
  1daabe5c
- Add version. · 957a92b4
  Haowen Zhang authored Aug 20, 2021
  
  957a92b4
Aug 04, 2021
- Update README.md · b956460c
  Li Song authored Aug 03, 2021
  
  b956460c
- Update README.md · 4bed9c05
  Li Song authored Aug 03, 2021
  
  4bed9c05
- Update readme · 3bcd01ff
  Li authored Aug 03, 2021
  
  3bcd01ff
Aug 03, 2021
- Fixing an issue of hash table definition for barcode whitelist · 6b25bae9
  Li authored Aug 02, 2021
  
  6b25bae9
- Update readme · 3524e0e4
  Li authored Aug 02, 2021
  
  3524e0e4
- Support barcode size up to 32bp · 6e87d935
  Li authored Aug 02, 2021
  
  6e87d935
- Add the option --read-format for custom read and barcode format. · 636bee27
  Li authored Aug 02, 2021
  
  636bee27
Jul 04, 2021
- Merge pull request #16 from haowenz/li_dev2 · 6e97125b
  Haowen Zhang authored Jul 03, 2021
  6e97125b
Jul 03, 2021
- Less stringent MAPQ for single-end reads · 844c9e57
  Li authored Jul 03, 2021
  
  844c9e57
- Less stringent MAPQ for single-end reads · 82baf3ae
  Li authored Jul 03, 2021
  
  82baf3ae
Jun 24, 2021
- Merge pull request #12 from haowenz/li_dev2 · 45de7b40
  Haowen Zhang authored Jun 23, 2021
  45de7b40
- Fix an issue of wrong start position for reverse alignment in SAM format · 363fb277
  Li authored Jun 23, 2021
  
  363fb277
Jun 22, 2021
- Update README.md · 9cf6cefe
  Li Song authored Jun 21, 2021
  
  9cf6cefe
- Update README.md · 38a15845
  Li Song authored Jun 21, 2021
  
  38a15845
- Merge pull request #8 from haowenz/li_dev2 · e79d3b79
  Li Song authored Jun 21, 2021
  e79d3b79
- Fix a bug when not read mapped. · 89924e57
  Li authored Jun 21, 2021
  
  89924e57
Jun 21, 2021
- Update README.md · 80f75ed0
  Li Song authored Jun 20, 2021
  
  80f75ed0
- Update README.md · 924a432a
  Haowen Zhang authored Jun 20, 2021
  
  924a432a
- Compute positions before deleting cigars · ceaecfa1
  Haowen Zhang authored Jun 20, 2021
  
  ceaecfa1
- Output seq and qual in SAM · f1027656
  Haowen Zhang authored Jun 20, 2021
  
  f1027656
Jun 20, 2021
- Fix a memory leak when outputing SAM · c5947019
  Haowen Zhang authored Jun 20, 2021
  
  c5947019
- Merge branch 'master' of github.com:haowenz/chromap · e006b5b0
  Haowen Zhang authored Jun 20, 2021
  
  e006b5b0

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Commits · 8dfd28a6765a16f55bd75847152bb796a06f8f19