Loading README.md +3 −1 Original line number Diff line number Diff line Loading @@ -119,7 +119,9 @@ Chromap also supports user-defined barcode format, including mixed barcode and g data case. User can specify the sequence structure through option "--read-format". The value is comma-separated string, each field is also semi-comma-splitted string: [r1|r2|bc]:start:end. The start and end(inclusive, -1 means to the read end). For the example that the barcode is in read1's first 16bp, one can use the option "--read-format bc:0:15,r1:16:-1". first 16bp, one can use the option -1 read1.fq.gz -2 read2.fq.gz --barcode read1.fq.gz --read-format bc:0:15,r1:16:-1 The BED format (fragment file) for bulk and single-cell is different except for the first three columns. For bulk data, the columns are Loading Loading
README.md +3 −1 Original line number Diff line number Diff line Loading @@ -119,7 +119,9 @@ Chromap also supports user-defined barcode format, including mixed barcode and g data case. User can specify the sequence structure through option "--read-format". The value is comma-separated string, each field is also semi-comma-splitted string: [r1|r2|bc]:start:end. The start and end(inclusive, -1 means to the read end). For the example that the barcode is in read1's first 16bp, one can use the option "--read-format bc:0:15,r1:16:-1". first 16bp, one can use the option -1 read1.fq.gz -2 read2.fq.gz --barcode read1.fq.gz --read-format bc:0:15,r1:16:-1 The BED format (fragment file) for bulk and single-cell is different except for the first three columns. For bulk data, the columns are Loading
