Commits · 6d528b23cc086237ea7eee2bbff25a4646786133 · github_fork / ZUMIs

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Nov 12, 2019
- optimise BC selection · 6d528b23
  Christoph authored Nov 12, 2019
  
  View commits for tag zUMIs2.5.6b zUMIs2.5.6b
  
  6d528b23
Oct 15, 2019
- demultiplexing can be NULL · 8a2b58d0
  Christoph authored Oct 15, 2019
  
  8a2b58d0
- optimize PE · 80ef0c92
  Christoph authored Oct 14, 2019
  
  80ef0c92
Oct 02, 2019
- Merge pull request #145 from tfehlmann/fix_negative_vector_length · 70f3705d
  cziegenhain authored Oct 02, 2019
  70f3705d
- Merge pull request #144 from tfehlmann/fix_symlinks · 87223ce1
  cziegenhain authored Oct 01, 2019
  87223ce1
- Aggregate indices as list inside data.table and extract them as vector using unlist() · c9511489
  Tobias Fehlmann authored Oct 01, 2019
  
  c9511489
- Merge branch 'master' into fix_symlinks · cf7b147b
  Tobias Fehlmann authored Oct 01, 2019
  
  cf7b147b
Sep 02, 2019
- BC detect · f50d3075
  Christoph authored Sep 02, 2019
  
  f50d3075
Sep 01, 2019
- Merge pull request #139 from tfehlmann/master · 08504b4a
  cziegenhain authored Sep 01, 2019
  08504b4a
Aug 30, 2019
- Allow input files to be symlinks. · 9e643a71
  Tobias Fehlmann authored Aug 30, 2019
  
  9e643a71
- Ensure that at least 1GB of RAM is available for each samtools sort call. · 4b01aacd
  Tobias Fehlmann authored Aug 30, 2019
  
  4b01aacd
Aug 13, 2019
- improve consistency of UMI-correction in bam files · 35bcacce
  Christoph authored Aug 12, 2019
  
  35bcacce
Aug 09, 2019
- zUMIs2.5.4 featureCounts · aa3f2c90
  Christoph authored Aug 09, 2019
  
  View commits for tag 2.5.4 2.5.4
  
  aa3f2c90
- optimizations · 9b490333
  Christoph authored Aug 08, 2019
  
  9b490333
Aug 02, 2019
- minor bug fix · 854a1b43
  Christoph authored Aug 02, 2019
  
  854a1b43
- optimize ham UMI collapse · 890919a7
  Christoph authored Aug 02, 2019
  
  890919a7
Aug 01, 2019
- take correct fasta · 5436fa46
  Christoph authored Aug 01, 2019
  
  5436fa46
Jul 31, 2019
- zUMIs2.5.1 demultiplexing · 0d5155d3
  Christoph authored Jul 30, 2019
  
  0d5155d3
Jul 26, 2019
- control RAM use better in case of ham dist UMI collapse · 919fdf69
  Christoph authored Jul 26, 2019
  
  919fdf69
Jul 24, 2019
- shiny update defaults · d6b6c207
  Christoph authored Jul 23, 2019
  
  d6b6c207
- change default yaml setting · fd244a48
  Christoph authored Jul 23, 2019
  
  fd244a48
- zUMIs2.5 improve BC error correction · aae3813a
  Christoph authored Jul 23, 2019
  
  View commits for tag 2.5.0 2.5.0
  
  aae3813a
Jul 23, 2019
- Add BBmap compatibility · 6b55fc83
  Christoph authored Jul 23, 2019
  
  6b55fc83
May 01, 2019
- clean up tmp files after stats run · ac5d21d4
  Christoph authored Apr 30, 2019
  
  ac5d21d4
Apr 30, 2019
- zUMIs2.4.5 fixed stats performance · d9aef083
  Christoph authored Apr 30, 2019
  
  d9aef083
- typo · 97deb995
  Christoph authored Apr 29, 2019
  
  97deb995
Apr 29, 2019
- increase mapping performance · a453b22d
  Christoph authored Apr 29, 2019
  
  a453b22d
Apr 28, 2019
- Merge branch 'master' of https://github.com/sdparekh/zUMIs · 0754194e
  Christoph Ziegenhain authored Apr 28, 2019
  
  0754194e
- ham dist parallelization · 06637333
  Christoph Ziegenhain authored Apr 28, 2019
  
  06637333
Apr 25, 2019
- Update issue templates · 9a4213a8
  Swati Parekh authored Apr 25, 2019
  9a4213a8
- read yaml · 24746c5b
  Christoph authored Apr 25, 2019
  
  24746c5b
Apr 24, 2019
- fix decision on hamming threading · 030e53b8
  Christoph authored Apr 24, 2019
  
  030e53b8
- parallelize samtools reading · ae168315
  Christoph authored Apr 23, 2019
  
  ae168315
Apr 23, 2019
- fixed a bug in ss3 · 6a8bc4a7
  Swati Parekh authored Apr 23, 2019
  
  6a8bc4a7
- fixed a baseshift in ss3 · 5d6b7502
  Swati Parekh authored Apr 23, 2019
  
  5d6b7502
- fix small merge issue · 58b03708
  Christoph Ziegenhain authored Apr 23, 2019
  
  58b03708
- Merge branch 'master' of https://github.com/sdparekh/zUMIs · 8ee55514
  Swati Parekh authored Apr 23, 2019
  8ee55514
- handled special case of smart3 · 6eaf9b7a
  Swati Parekh authored Apr 23, 2019
  
  6eaf9b7a
- remove unixtools · bf17bb8a
  Christoph authored Apr 23, 2019
  
  bf17bb8a
- prevent stats problem with old data.table versions · e667882d
  Christoph Ziegenhain authored Apr 22, 2019
  
  e667882d

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Commits · 6d528b23cc086237ea7eee2bbff25a4646786133