Commit fe9bc983 authored by cziegenhain's avatar cziegenhain
Browse files

tweak demultiplex

parent 97f473e3

UMIstuffFUN.R

+1 −0
Original line number Diff line number Diff line
@@ -431,6 +431,7 @@ demultiplex_bam <- function(opt, bamfile, nBCs, samtoolsexc, bccount){ 
      }, mc.cores = threads_chromosomes)

      

    }else{

      collect_demultiplex = FALSE

      outstub <- paste0(opt$out_dir,"/zUMIs_output/demultiplexed/",opt$project,".")

      demux_cmd <- paste(

        "python3", py_script,

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