Loading UMIstuffFUN.R +1 −1 Original line number Diff line number Diff line Loading @@ -405,7 +405,7 @@ demultiplex_bam <- function(opt, bamfile, nBCs, samtoolsexc, bccount){ py_script <- paste0(opt$zUMIs_directory,"/misc/demultiplex_BC.py") print("Demultiplexing zUMIs bam file...") if(threads_decompress > 10){ #if capacity is there, do demultiplexing parallelised per chromosome if(threads_decompress > 10 & nBCs < 2500){ #if capacity is there, do demultiplexing parallelised per chromosome collect_demultiplex = TRUE #set a flag to remember to collect the output chunks later demux_cmd <- "sleep 1" #set a decoy system command threads_decompress = 10 Loading Loading
UMIstuffFUN.R +1 −1 Original line number Diff line number Diff line Loading @@ -405,7 +405,7 @@ demultiplex_bam <- function(opt, bamfile, nBCs, samtoolsexc, bccount){ py_script <- paste0(opt$zUMIs_directory,"/misc/demultiplex_BC.py") print("Demultiplexing zUMIs bam file...") if(threads_decompress > 10){ #if capacity is there, do demultiplexing parallelised per chromosome if(threads_decompress > 10 & nBCs < 2500){ #if capacity is there, do demultiplexing parallelised per chromosome collect_demultiplex = TRUE #set a flag to remember to collect the output chunks later demux_cmd <- "sleep 1" #set a decoy system command threads_decompress = 10 Loading
