Commit 0d159688 authored by Swati Parekh's avatar Swati Parekh
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Changed example data, README and Wiki

parent b97ca66a
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ExampleData/example.Log.final.out

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                                 Started job on |	Jun 23 13:37:27
                             Started mapping on |	Jun 23 13:52:03
                                    Finished on |	Jun 23 13:52:55
       Mapping speed, Million of reads per hour |	59.07

                          Number of input reads |	853296
                      Average input read length |	50
                                    UNIQUE READS:
                   Uniquely mapped reads number |	531550
                        Uniquely mapped reads % |	62.29%
                          Average mapped length |	49.33
                       Number of splices: Total |	36122
            Number of splices: Annotated (sjdb) |	35553
                       Number of splices: GT/AG |	35560
                       Number of splices: GC/AG |	199
                       Number of splices: AT/AC |	41
               Number of splices: Non-canonical |	322
                      Mismatch rate per base, % |	0.31%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.22
                        Insertion rate per base |	0.01%
                       Insertion average length |	1.25
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	278255
             % of reads mapped to multiple loci |	32.61%
        Number of reads mapped to too many loci |	23
             % of reads mapped to too many loci |	0.00%
                                  UNMAPPED READS:
       % of reads unmapped: too many mismatches |	0.00%
                 % of reads unmapped: too short |	4.41%
                     % of reads unmapped: other |	0.68%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%

ExampleData/example.Log.out

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           Time    Speed        Read     Read   Mapped   Mapped   Mapped   Mapped Unmapped Unmapped Unmapped Unmapped
                    M/hr      number   length   unique   length   MMrate    multi   multi+       MM    short    other
Jun 23 13:49:13	Started 1st pass mapping
Jun 23 13:49:23     71.7      199103       50    62.1%     49.3     0.3%    32.6%     0.0%     0.0%     4.5%     0.7%
Jun 23 13:49:58	Finished 1st pass mapping
ALL DONE!

ExampleData/example.SJ.out.tab

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