optimised for the -w counting switch (b97ca66a) · Commits · github_fork / ZUMIs

zUMIs-master.sh

+0 −1

Original line number	Diff line number	Diff line
		@@ -235,7 +235,6 @@ if [[ "$isslurm" == "yes" ]] ; then
		bash $zumisdir/zUMIs-cleaning.sh $sname $outdir
		;;
		"counting")
		bash $zumisdir/zUMIs-prepCounting.sh $sname $outdir $threads $samtoolsexc
		bash $zumisdir/zUMIs-counting.sh $sname $outdir $barcodes $threads $gtf $strandedness $xcrange $xmrange $subsampling $zumisdir $isStats $whichStage $isstrt $bcread2 $xcrange2
		bash $zumisdir/zUMIs-cleaning.sh $sname $outdir
		;;