Loading launch_universc.sh +4 −4 Original line number Diff line number Diff line Loading @@ -330,14 +330,14 @@ for i in {1..2}; do exit 1 fi #allow detection of file extension (needed for --file input) elif [ -f ${read}.fq ] || [ ! -h ${read}.fq ]; then elif [ -f ${read}.fq ] || [ -h ${read}.fq ]; then read=${read}.fq elif [ -f ${read}.fastq ] || [ ! -h ${read}.fastq ]; then elif [ -f ${read}.fastq ] || [ -h ${read}.fastq ]; then read=${read}.fastq elif [ -f ${read}.fq.gz ] || [ ! -h ${read}.fq.gz ]; then elif [ -f ${read}.fq.gz ] || [ -h ${read}.fq.gz ]; then gunzip -f -k ${read}.fq.gz read=${read}.fq elif [ -f ${read}.fastq.gz ] || [ ! -h ${read}.fastq.gz ]; then elif [ -f ${read}.fastq.gz ] || [ -h ${read}.fastq.gz ]; then gunzip -f -k ${read}.fastq.gz read=${read}.fastq else Loading Loading
launch_universc.sh +4 −4 Original line number Diff line number Diff line Loading @@ -330,14 +330,14 @@ for i in {1..2}; do exit 1 fi #allow detection of file extension (needed for --file input) elif [ -f ${read}.fq ] || [ ! -h ${read}.fq ]; then elif [ -f ${read}.fq ] || [ -h ${read}.fq ]; then read=${read}.fq elif [ -f ${read}.fastq ] || [ ! -h ${read}.fastq ]; then elif [ -f ${read}.fastq ] || [ -h ${read}.fastq ]; then read=${read}.fastq elif [ -f ${read}.fq.gz ] || [ ! -h ${read}.fq.gz ]; then elif [ -f ${read}.fq.gz ] || [ -h ${read}.fq.gz ]; then gunzip -f -k ${read}.fq.gz read=${read}.fq elif [ -f ${read}.fastq.gz ] || [ ! -h ${read}.fastq.gz ]; then elif [ -f ${read}.fastq.gz ] || [ -h ${read}.fastq.gz ]; then gunzip -f -k ${read}.fastq.gz read=${read}.fastq else Loading
