Loading launch_universc.sh +7 −7 Original line number Diff line number Diff line Loading @@ -311,7 +311,7 @@ for i in {1..2}; do fi if [[ -f $read ]] && [[ -h $read ]]; then if [[ $read == *"gz" ]]; then gunzip -k $read gunzip -f -k $read #update file variable read=`echo $read | sed -e "s/\.gz//g"` fi Loading @@ -330,15 +330,15 @@ for i in {1..2}; do exit 1 fi #allow detection of file extension (needed for --file input) elif [ -f ${read}.fq ] && [ ! -h ${read}.fq ]; then elif [ -f ${read}.fq ] || [ ! -h ${read}.fq ]; then read=${read}.fq elif [ -f ${read}.fastq ] && [ ! -h ${read}.fastq ]; then elif [ -f ${read}.fastq ] || [ ! -h ${read}.fastq ]; then read=${read}.fastq elif [ -f ${read}.fq.gz ] && [ ! -h ${read}.fq.gz ]l then gunzip -k ${read}.fq.gz elif [ -f ${read}.fq.gz ] || [ ! -h ${read}.fq.gz ]; then gunzip -f -k ${read}.fq.gz read=${read}.fq elif [ -f ${read}.fastq.gz ] && [ ! -h $read ]; then gunzip -k ${read}.fastq.gz elif [ -f ${read}.fastq.gz ] || [ ! -h ${read}.fastq.gz ]; then gunzip -f -k ${read}.fastq.gz read=${read}.fastq else echo "Error: $read not found" Loading Loading
launch_universc.sh +7 −7 Original line number Diff line number Diff line Loading @@ -311,7 +311,7 @@ for i in {1..2}; do fi if [[ -f $read ]] && [[ -h $read ]]; then if [[ $read == *"gz" ]]; then gunzip -k $read gunzip -f -k $read #update file variable read=`echo $read | sed -e "s/\.gz//g"` fi Loading @@ -330,15 +330,15 @@ for i in {1..2}; do exit 1 fi #allow detection of file extension (needed for --file input) elif [ -f ${read}.fq ] && [ ! -h ${read}.fq ]; then elif [ -f ${read}.fq ] || [ ! -h ${read}.fq ]; then read=${read}.fq elif [ -f ${read}.fastq ] && [ ! -h ${read}.fastq ]; then elif [ -f ${read}.fastq ] || [ ! -h ${read}.fastq ]; then read=${read}.fastq elif [ -f ${read}.fq.gz ] && [ ! -h ${read}.fq.gz ]l then gunzip -k ${read}.fq.gz elif [ -f ${read}.fq.gz ] || [ ! -h ${read}.fq.gz ]; then gunzip -f -k ${read}.fq.gz read=${read}.fq elif [ -f ${read}.fastq.gz ] && [ ! -h $read ]; then gunzip -k ${read}.fastq.gz elif [ -f ${read}.fastq.gz ] || [ ! -h ${read}.fastq.gz ]; then gunzip -f -k ${read}.fastq.gz read=${read}.fastq else echo "Error: $read not found" Loading
