correct bug restoring 10x settings (10x tests passing)

    fi

    if [[ $technology == "10x" ]] && [[ $barcodefile == "default:10x" ]]; then

        #restore logo in HTML template

        if [[ $verbose  ]]; then

                echo "restore logo in summary HTML"

        fi

        if [[ -f ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/webshim/template/navbar.backup.html ]];then

            cp ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/webshim/template/navbar.backup.html ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/webshim/template/navbar.html

        fi

    #convert whitelist to the appropriate barcode

    echo " converting whitelist"

    if [[ ${barcodefile} == "default:10x" ]]; then

        if [[ $verbose ]]; then

            echo "  ... restoring 10x barcodes"

        fi

        #for version 2

        cp ${v2}.backup ${v2}

        #for version 3

            echo As: $As

            sed -i "s/^/$As/" ${v2} #Trim the first n characters from the beginning of the quality

        fi

    fi

        #for version 3

        cat ${v2} > ${v3}

    fi

        if [[ -f translation/${v3}.gz ]]; then

            rm translation/${v3}.gz

            awk -F , -v OFS="\t" '{print $1, "\t", $1}' $v3 > translation/${v3}