Loading launch_universc.sh +0 −6 Original line number Diff line number Diff line Loading @@ -1081,27 +1081,21 @@ for key in ${keys[@]}; do fi if [[ -f $(find $(dirname ${read}) -name $(basename ${read})'*.gz') ]]; then rename -f "s/_${readkey}.(.*).gz/_${readkey}_001\.\$1.gz/g" ${read}*gz # read=`echo $read | sed -e "s/_${readkey}/_${readkey}_001/g"` fi if [[ ${read} == *.gz ]]; then rename -f "s/_${readkey}.(.*).gz/_${readkey}_001\.\$1.gz/g" ${read} # read=`echo $read | sed -e "s/_${readkey}.(.*).gz/_${readkey}_001\.\$1.gz/g"` fi if [[ -f $(find $(dirname ${read}) -name $(basename ${read})'*.fastq') ]]; then rename -f "s/_${readkey}.(.*)/_${readkey}_001\.\$1/" ${read}*.fastq # read=`echo $read | sed -e "s/_${readkey}(.*).fastq/_${readkey}_001.fastq/g"` fi if [[ -f $(find $(dirname ${read}) -name $(basename ${read})'*.fq') ]]; then rename -f "s/_${readkey}.(.*)/_${readkey}_001\.\$1/" ${read}*.fq # read=`echo $read | sed -e "s/_${readkey}(.*).fq/_${readkey}_001.fq/g"` fi if [[ ${read} == *.fastq ]]; then rename -f "s/_${readkey}(.*).fastq/_${readkey}_001\.fastq/" ${read} ${read}.gz # read=`echo $read | sed -e "s/_${readkey}*.fastq/_${readkey}_001.fastq/g"` fi if [[ ${read} == *.fq ]]; then rename -f "s/_${readkey}(.*).fq/_${readkey}_001\.fq/" ${read} # read=`echo $read | sed -e "s/_${readkey}*.fq/_${readkey}_001\.fq/g"` fi #update file variable if [[ ${read} == *.gz ]] || [[ ${read} == *.fastq ]] || [[ ${read} == *.fq ]] || [[ -f ${read} ]]; then Loading Loading
launch_universc.sh +0 −6 Original line number Diff line number Diff line Loading @@ -1081,27 +1081,21 @@ for key in ${keys[@]}; do fi if [[ -f $(find $(dirname ${read}) -name $(basename ${read})'*.gz') ]]; then rename -f "s/_${readkey}.(.*).gz/_${readkey}_001\.\$1.gz/g" ${read}*gz # read=`echo $read | sed -e "s/_${readkey}/_${readkey}_001/g"` fi if [[ ${read} == *.gz ]]; then rename -f "s/_${readkey}.(.*).gz/_${readkey}_001\.\$1.gz/g" ${read} # read=`echo $read | sed -e "s/_${readkey}.(.*).gz/_${readkey}_001\.\$1.gz/g"` fi if [[ -f $(find $(dirname ${read}) -name $(basename ${read})'*.fastq') ]]; then rename -f "s/_${readkey}.(.*)/_${readkey}_001\.\$1/" ${read}*.fastq # read=`echo $read | sed -e "s/_${readkey}(.*).fastq/_${readkey}_001.fastq/g"` fi if [[ -f $(find $(dirname ${read}) -name $(basename ${read})'*.fq') ]]; then rename -f "s/_${readkey}.(.*)/_${readkey}_001\.\$1/" ${read}*.fq # read=`echo $read | sed -e "s/_${readkey}(.*).fq/_${readkey}_001.fq/g"` fi if [[ ${read} == *.fastq ]]; then rename -f "s/_${readkey}(.*).fastq/_${readkey}_001\.fastq/" ${read} ${read}.gz # read=`echo $read | sed -e "s/_${readkey}*.fastq/_${readkey}_001.fastq/g"` fi if [[ ${read} == *.fq ]]; then rename -f "s/_${readkey}(.*).fq/_${readkey}_001\.fq/" ${read} # read=`echo $read | sed -e "s/_${readkey}*.fq/_${readkey}_001\.fq/g"` fi #update file variable if [[ ${read} == *.gz ]] || [[ ${read} == *.fastq ]] || [[ ${read} == *.fq ]] || [[ -f ${read} ]]; then Loading
