avoid duplicates in whitelist (c37b8d40) · Commits · github_fork / Universc

launch_universc.sh

+4 −4

Original line number	Diff line number	Diff line
		@@ -354,7 +354,7 @@ if [[ $setup == "true" ]]
		cp 737K-august-2016.txt 737K-august-2016.txt.backup
		fi
		#combine 10x and Nadia barcodes
		cat nadia_barcode.txt 737K-august-2016.txt.backup > 737K-august-2016.txt
		cat nadia_barcode.txt 737K-august-2016.txt.backup \| sort \| uniq > 737K-august-2016.txt
		echo "whitelist converted for Nadia compatibility with version 2 kit"
		#create version 3 files if version 3 whitelist available
		if [ -f 3M-february-2018.txt.gz ]
		@@ -377,7 +377,7 @@ if [[ $setup == "true" ]]
		then
		gzip -f nadia_barcode.txt
		fi
		zcat nadia_barcode.txt.gz 3M-february-2018.txt.backup.gz > 3M-february-2018.txt
		zcat nadia_barcode.txt.gz 3M-february-2018.txt.backup.gz \| sort \| uniq > 3M-february-2018.txt
		gzip -f 3M-february-2018.txt
		echo "whitelist converted for Nadia compatibility with version 3 kit"
		fi
		@@ -409,7 +409,7 @@ if [[ $setup == "true" ]]
		cp 737K-august-2016.txt 737K-august-2016.txt.backup
		fi
		#combine 10x and Nadia barcodes
		cat iCELL8_barcode.txt 737K-august-2016.txt.backup > 737K-august-2016.txt
		cat iCELL8_barcode.txt 737K-august-2016.txt.backup \| sort \| uniq > 737K-august-2016.txt
		echo "whitelist converted for iCELL8 compatibility with version 2 kit"
		#create version 3 files if version 3 whitelist available
		if [ -f 3M-february-2018.txt.gz ]
		@@ -432,7 +432,7 @@ if [[ $setup == "true" ]]
		then
		gzip -f iCELL8_barcode.txt
		fi
		zcat iCELL8_barcode.txt.gz 3M-february-2018.txt.backup.gz > 3M-february-2018.txt
		zcat iCELL8_barcode.txt.gz 3M-february-2018.txt.backup.gz \| sort \| uniq > 3M-february-2018.txt
		gzip -f 3M-february-2018.txt
		echo "whitelist converted for iCELL8 compatibility with version 3 kit"
		fi

Admin message