Loading launch_universc.sh +5 −3 Original line number Diff line number Diff line Loading @@ -573,8 +573,10 @@ LANE=$(echo "${LANE[@]}" | tr ' ' '\n' | sort -u | tr '\n' ',' | sed 's/,$//') #check if ID is present if [[ -z $id ]] && [[ ${#read1[@]} -eq 0 ]]; then if [[ $setup == "false" ]] ; then echo "Error: option --id is required" exit 1 fi elif [[ $id == *" "* ]]; then echo "Error: \"$id\" for option -id must not contain a space" exit 1 Loading Loading @@ -850,7 +852,7 @@ if [[ $setup == "true" ]]; then #copy known iCell8 barcodes from convert repo to cellranger install rsync -u ${SCRIPT_DIR}/iCell8_barcode.txt ${DIR}-cs/${VERSION}/lib/python/cellranger/barcodes/iCell8_barcode.txt #convert barcode whitelist to match converted barcodes sed -i 's/^/AAAAA/g' iCell8_barcodes.txt sed -i 's/^/AAAAA/g' iCell8_barcode.txt echo " imported expected barcodes for iCELL8 ..." fi echo "Valid barcodes can be calculated accurately for iCELL8" Loading Loading
launch_universc.sh +5 −3 Original line number Diff line number Diff line Loading @@ -573,8 +573,10 @@ LANE=$(echo "${LANE[@]}" | tr ' ' '\n' | sort -u | tr '\n' ',' | sed 's/,$//') #check if ID is present if [[ -z $id ]] && [[ ${#read1[@]} -eq 0 ]]; then if [[ $setup == "false" ]] ; then echo "Error: option --id is required" exit 1 fi elif [[ $id == *" "* ]]; then echo "Error: \"$id\" for option -id must not contain a space" exit 1 Loading Loading @@ -850,7 +852,7 @@ if [[ $setup == "true" ]]; then #copy known iCell8 barcodes from convert repo to cellranger install rsync -u ${SCRIPT_DIR}/iCell8_barcode.txt ${DIR}-cs/${VERSION}/lib/python/cellranger/barcodes/iCell8_barcode.txt #convert barcode whitelist to match converted barcodes sed -i 's/^/AAAAA/g' iCell8_barcodes.txt sed -i 's/^/AAAAA/g' iCell8_barcode.txt echo " imported expected barcodes for iCELL8 ..." fi echo "Valid barcodes can be calculated accurately for iCELL8" Loading
