correct creating directory for converted files (38066494) · Commits · github_fork / Universc

launch_universc.sh

+2 −2

Original line number	Diff line number	Diff line
		@@ -90,7 +90,7 @@ lockfile=${DIR}-cs/${VERSION}/lib/python/cellranger/barcodes/.lock #path for .lo
		lastcallfile=${DIR}-cs/${VERSION}/lib/python/cellranger/barcodes/.last_called #path for .last_called
		lastcall=`cat $lastcallfile`
		barcodefolder=${DIR}-cs/${VERSION}/lib/python/cellranger/barcodes #folder with the barcodes
		cdrIN="input4cellranger" #name of the directory with all FASTQ files given to cellranger
		crIN="input4cellranger" #name of the directory with all FASTQ files given to cellranger

		#variable options
		setup=false
		@@ -931,7 +931,7 @@ convFiles=()

		if [[ ! -d $crIN ]]; then
		echo " directory $crIN created for converted files"
		mkdir $crIN
		mkdir -p $crIN
		else
		echo " directory $crIN already exists"
		fi