Loading launch_universc.sh +13 −12 Original line number Diff line number Diff line Loading @@ -938,20 +938,21 @@ if [[ -n "$barcodefile" ]]; then else #getting absolute path barcodefile=$(readlink -f $barcodefile) #checking barcode file format (requires 1 column of barcodes) #allowing WellList from ICELL8 if [[ "$technology" == "icell8" ]]; then n_col_tsv=$(awk -F'\t' '{print NF}' $barcodefile | sort -nu | tail -n 1) n_col_csv=$(awk -F',' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_tsv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "\t" "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -f$col_n > ${barcodefile}_barcod.txt barcodefile=${barcodefile}_barcode.txt fi n_col_csv=$(awk -F',' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_csv -gt 1 ]]; then elif [[ $n_col_csv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "," "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -d"," -f$col_n > ${barcodefile}_barcode.txt barcodefile=${barcodefile}_barcode.txt fi fi fi else if [[ "$technology" == "10x"* ]]; then barcodefile="default:10x" Loading Loading
launch_universc.sh +13 −12 Original line number Diff line number Diff line Loading @@ -938,20 +938,21 @@ if [[ -n "$barcodefile" ]]; then else #getting absolute path barcodefile=$(readlink -f $barcodefile) #checking barcode file format (requires 1 column of barcodes) #allowing WellList from ICELL8 if [[ "$technology" == "icell8" ]]; then n_col_tsv=$(awk -F'\t' '{print NF}' $barcodefile | sort -nu | tail -n 1) n_col_csv=$(awk -F',' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_tsv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "\t" "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -f$col_n > ${barcodefile}_barcod.txt barcodefile=${barcodefile}_barcode.txt fi n_col_csv=$(awk -F',' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_csv -gt 1 ]]; then elif [[ $n_col_csv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "," "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -d"," -f$col_n > ${barcodefile}_barcode.txt barcodefile=${barcodefile}_barcode.txt fi fi fi else if [[ "$technology" == "10x"* ]]; then barcodefile="default:10x" Loading
