Loading launch_universc.sh +9 −9 Original line number Diff line number Diff line Loading @@ -3,7 +3,7 @@ install=false ######convert version##### convertversion="1.0.0.9001" convertversion="1.0.0.9002" ########## Loading Loading @@ -937,19 +937,19 @@ if [[ -n "$barcodefile" ]]; then exit 1 else #getting absolute path barcodefile=`readlink -f $barcodefile` barcodefile=$(readlink -f $barcodefile) #checking barcode file format (requires 1 column of barcodes) n_col_tsv=$(awk -F'\t' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_tsv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "\t" "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -f$col_n > ${barcodefile}_barcodes $barcodefile=${barcodefile}_barcodes tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -f$col_n > ${barcodefile}_barcod.txt barcodefile=${barcodefile}_barcode.txt fi n_col_csv=$(awk -F',' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_tsv -gt 1 ]]; then if [[ $n_col_csv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "," "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -d"," -f$col_n > ${barcodefile}_barcodes $barcodefile=${barcodefile}_barcodes tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -d"," -f$col_n > ${barcodefile}_barcode.txt barcodefile=${barcodefile}_barcode.txt fi fi else Loading Loading
launch_universc.sh +9 −9 Original line number Diff line number Diff line Loading @@ -3,7 +3,7 @@ install=false ######convert version##### convertversion="1.0.0.9001" convertversion="1.0.0.9002" ########## Loading Loading @@ -937,19 +937,19 @@ if [[ -n "$barcodefile" ]]; then exit 1 else #getting absolute path barcodefile=`readlink -f $barcodefile` barcodefile=$(readlink -f $barcodefile) #checking barcode file format (requires 1 column of barcodes) n_col_tsv=$(awk -F'\t' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_tsv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "\t" "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -f$col_n > ${barcodefile}_barcodes $barcodefile=${barcodefile}_barcodes tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -f$col_n > ${barcodefile}_barcod.txt barcodefile=${barcodefile}_barcode.txt fi n_col_csv=$(awk -F',' '{print NF}' $barcodefile | sort -nu | tail -n 1) if [[ $n_col_tsv -gt 1 ]]; then if [[ $n_col_csv -gt 1 ]]; then col_n=$(head -n 1 test/shared/icell8-test/WellList.txt | tr "," "\n" | grep -n "[Bb]arcode" | head -n 1 | cut -d":" -f1) tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -d"," -f$col_n > ${barcodefile}_barcodes $barcodefile=${barcodefile}_barcodes tail -n $(($(wc -l $barcodefile | cut -d" " -f5)-1)) $barcodefile | cut -d"," -f$col_n > ${barcodefile}_barcode.txt barcodefile=${barcodefile}_barcode.txt fi fi else Loading
