Commit 0148cf76 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

correct setup call without inputs

parent 19bcbd79
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+4 −4
Original line number Original line Diff line number Diff line
@@ -615,7 +615,7 @@ elif [[ $id == *" "* ]]; then
fi
fi


#check if reference is present
#check if reference is present
if [[ -z $reference ]] && [[ $setup != "false" ]]; then
if [[ -z $reference ]] && [[ $setup == "false" ]]; then
    echo "Error: option --reference is required"
    echo "Error: option --reference is required"
    exit 1
    exit 1
fi
fi